Eucgr.E00847 (Eucalyptus grandis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Eucgr.E00847 T334466_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.479 0.663
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.479 0.663
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.E00847.1 Sox 180 248
Eucgr.E00847.1 Sox 297 363
Eucgr.E00847.1 Sox 420 488

Links

Other Sox family TFs
Other Eucalyptus grandis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Moror_11062 Moniliophthora roreri Moror_11062 I
GYMLUDRAFT_42922 Gymnopus luxurians GYMLUDRAFT_42922 I
GYMLUDRAFT_45397 Gymnopus luxurians GYMLUDRAFT_45397 I
JAAARDRAFT_30847 Jaapia argillacea JAAARDRAFT_30847 I
K443DRAFT_2600 Laccaria amethystina K443DRAFT_2600 I
K443DRAFT_674079 Laccaria amethystina K443DRAFT_674079 I
LACBIDRAFT_317135 Laccaria bicolor LACBIDRAFT_317135 I
M413DRAFT_310281 Hebeloma cylindrosporum M413DRAFT_310281 I
M413DRAFT_445487 Hebeloma cylindrosporum M413DRAFT_445487 I
M413DRAFT_446984 Hebeloma cylindrosporum M413DRAFT_446984 I
AGABI2DRAFT_187697 Agaricus bisporus AGABI2DRAFT_187697 I
Moror_17515 Moniliophthora roreri Moror_17515 I
Moror_4700 Moniliophthora roreri Moror_4700 I
PHLGIDRAFT_32525 Phlebiopsis gigantea PHLGIDRAFT_32525 I
PLEOSDRAFT_1097493 Pleurotus ostreatus PLEOSDRAFT_1097493 I
PLEOSDRAFT_30253 Pleurotus ostreatus PLEOSDRAFT_30253 I
SCHCODRAFT_111379 Schizophyllum commune SCHCODRAFT_111379 I
SCHCODRAFT_258888 Schizophyllum commune SCHCODRAFT_258888 I
SCHCODRAFT_63410 Schizophyllum commune SCHCODRAFT_63410 I
SCLCIDRAFT_13431 Scleroderma citrinum SCLCIDRAFT_13431 I
DACRYDRAFT_21143 Dacryopinax sp DACRYDRAFT_21143 I
GALMADRAFT_96046 Galerina marginata GALMADRAFT_96046 I
CC1G_15575 Coprinopsis cinerea CC1G_15575 I
CERSUDRAFT_112795 Ceriporiopsis subvermispora CERSUDRAFT_112795 I
AGABI2DRAFT_222360 Agaricus bisporus AGABI2DRAFT_222360 I
GALMADRAFT_222679 Galerina marginata GALMADRAFT_222679 I
FOMPIDRAFT_148963 Fomitopsis pinicola FOMPIDRAFT_148963 I
PLICRDRAFT_47417 Plicaturopsis crispa PLICRDRAFT_47417 N
POSPLDRAFT_92181 Postia placenta POSPLDRAFT_92181 N
POSPLDRAFT_92179 Postia placenta POSPLDRAFT_92179 N
POSPLDRAFT_92176 Postia placenta POSPLDRAFT_92176 N
POSPLDRAFT_92174 Postia placenta POSPLDRAFT_92174 N
POSPLDRAFT_101241 Postia placenta POSPLDRAFT_101241 N
PLICRDRAFT_47428 Plicaturopsis crispa PLICRDRAFT_47428 N
POSPLDRAFT_97461 Postia placenta POSPLDRAFT_97461 N
CERSUDRAFT_112798 Ceriporiopsis subvermispora CERSUDRAFT_112798 N
PLEOSDRAFT_1034000 Pleurotus ostreatus PLEOSDRAFT_1034000 N
PISMIDRAFT_680566 Pisolithus microcarpus PISMIDRAFT_680566 N
PISMIDRAFT_100858 Pisolithus microcarpus PISMIDRAFT_100858 N
PILCRDRAFT_824811 Piloderma croceum PILCRDRAFT_824811 N
PILCRDRAFT_723293 Piloderma croceum PILCRDRAFT_723293 N
POSPLDRAFT_92233 Postia placenta POSPLDRAFT_92233 N
POSPLDRAFT_97457 Postia placenta POSPLDRAFT_97457 N
PHLGIDRAFT_175743 Phlebiopsis gigantea PHLGIDRAFT_175743 N
POSPLDRAFT_97463 Postia placenta POSPLDRAFT_97463 N
SCHCODRAFT_102295 Schizophyllum commune SCHCODRAFT_102295 N
BN946_scf184969.g81 Trametes cinnabarina BN946_scf184969.g81 N
SCHCODRAFT_269946 Schizophyllum commune SCHCODRAFT_269946 N
SCHCODRAFT_57027 Schizophyllum commune SCHCODRAFT_57027 N
SCLCIDRAFT_1222350 Scleroderma citrinum SCLCIDRAFT_1222350 N
AGABI2DRAFT_118399 Agaricus bisporus AGABI2DRAFT_118399 N
SERLA73DRAFT_177669 Serpula lacrymans SERLA73DRAFT_177669 N
SERLA73DRAFT_75787 Serpula lacrymans SERLA73DRAFT_75787 N
SERLA73DRAFT_87647 Serpula lacrymans SERLA73DRAFT_87647 N
fgenesh1_pg.C_scaffold_4000651 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000651 N
EuGene6000029 Heterobasidion annosum EuGene6000029 N
DICSQDRAFT_156876 Dichomitus squalens DICSQDRAFT_156876 N
GLOTRDRAFT_48184 Gloeophyllum trabeum GLOTRDRAFT_48184 N
GLOTRDRAFT_80766 Gloeophyllum trabeum GLOTRDRAFT_80766 N
GYMLUDRAFT_204658 Gymnopus luxurians GYMLUDRAFT_204658 N
GLOTRDRAFT_137935 Gloeophyllum trabeum GLOTRDRAFT_137935 N
HETIRDRAFT_327516 Heterobasidion irregulare HETIRDRAFT_327516 N
HETIRDRAFT_459850 Heterobasidion irregulare HETIRDRAFT_459850 N
HYDPIDRAFT_175933 Hydnomerulius pinastri HYDPIDRAFT_175933 N
JAAARDRAFT_123795 Jaapia argillacea JAAARDRAFT_123795 N
JAAARDRAFT_157067 Jaapia argillacea JAAARDRAFT_157067 N
FOMPIDRAFT_151847 Fomitopsis pinicola FOMPIDRAFT_151847 N
K443DRAFT_679409 Laccaria amethystina K443DRAFT_679409 N
FOMPIDRAFT_1121285 Fomitopsis pinicola FOMPIDRAFT_1121285 N
M404DRAFT_13375 Pisolithus tinctorius M404DRAFT_13375 N
M404DRAFT_997690 Pisolithus tinctorius M404DRAFT_997690 N
M404DRAFT_997743 Pisolithus tinctorius M404DRAFT_997743 N
PILCRDRAFT_142493 Piloderma croceum PILCRDRAFT_142493 N
M413DRAFT_446927 Hebeloma cylindrosporum M413DRAFT_446927 N
CY34DRAFT_804702 Suillus luteus CY34DRAFT_804702 N
CY34DRAFT_803634 Suillus luteus CY34DRAFT_803634 N
Moror_14051 Moniliophthora roreri Moror_14051 N
CY34DRAFT_797799 Suillus luteus CY34DRAFT_797799 N
CERSUDRAFT_145919 Ceriporiopsis subvermispora CERSUDRAFT_145919 N
Moror_6764 Moniliophthora roreri Moror_6764 N
PAXRUDRAFT_822949 Paxillus rubicundulus PAXRUDRAFT_822949 N
PAXRUDRAFT_827363 Paxillus rubicundulus PAXRUDRAFT_827363 N
PAXRUDRAFT_9870 Paxillus rubicundulus PAXRUDRAFT_9870 N
PHACADRAFT_208392 Phanerochaete carnosa PHACADRAFT_208392 N
PHLGIDRAFT_127425 Phlebiopsis gigantea PHLGIDRAFT_127425 N
GLOTRDRAFT_139640 Gloeophyllum trabeum GLOTRDRAFT_139640 N
CERSUDRAFT_114708 Ceriporiopsis subvermispora CERSUDRAFT_114708 N