gene30574-v1.0-hybrid (Fragaria vesca)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gene30574-v1.0-hybrid T334522_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna30574.1-v1.0-hybrid Sox 49 118

Links

Other Sox family TFs
Other Fragaria vesca TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G111045 Zea mays GRMZM2G111045 I
MLOC_16981 Hordeum vulgare MLOC_16981 I
MLOC_18177 Hordeum vulgare MLOC_18177 I
PDK_20s1698071g001 Phoenix dactylifera PDK_20s1698071g001 N
GLYMA05G17994 Glycine max GLYMA05G17994 N
Lus10030442.g Linum usitatissimum Lus10030442.g N
evm.TU.supercontig_43.122 Carica papaya evm.TU.supercontig_43.122 N
evm.TU.supercontig_1993.2 Carica papaya evm.TU.supercontig_1993.2 N
mgf004018m Mimulus guttatus mgf004018m N
e_gw1.389.24.1 Physcomitrella patens e_gw1.389.24.1 N
e_gw1.1.456.1 Physcomitrella patens e_gw1.1.456.1 N
30027.m000837 Ricinus communis 30027.m000837 N
29933.m001439 Ricinus communis 29933.m001439 N
Ca_16645 Cicer arietinum Ca_16645 N
Ca_06925 Cicer arietinum Ca_06925 N
TRIUR3_30803 Triticum urartu TRIUR3_30803 N
Traes_2BL_216652F6B Triticum aestivum Traes_2BL_216652F6B N
SELMODRAFT_90153 Selaginella moellendorffii SELMODRAFT_90153 N
SELMODRAFT_89380 Selaginella moellendorffii SELMODRAFT_89380 N
SELMODRAFT_84608 Selaginella moellendorffii SELMODRAFT_84608 N
SELMODRAFT_78848 Selaginella moellendorffii SELMODRAFT_78848 N
SELMODRAFT_78303 Selaginella moellendorffii SELMODRAFT_78303 N
SELMODRAFT_39499 Selaginella moellendorffii SELMODRAFT_39499 N
SELMODRAFT_39496 Selaginella moellendorffii SELMODRAFT_39496 N
POPTR_0002s15900 Populus trichocarpa POPTR_0002s15900 N
OS08G0433400 Oryza sativa OS08G0433400 N
ORUFI06G25490 Oryza rufipogon ORUFI06G25490 N