Lus10030892.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10030892.g T334578_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.614 0.725
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.585 0.600
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.585 0.600
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.584 0.700
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.584 0.700
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.800
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10030892 Sox 60 99

Links

Other Sox family TFs
Other Linum usitatissimum TFs

474 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NechaG77217 Fusarium solani NechaG77217 N
fgenesh1_pg.sca_44_chr3_2_0000044 Nectria haematococca fgenesh1_pg.sca_44_chr3_2_0000044 N
Z517_03305 Fonsecaea pedrosoi Z517_03305 N
VHEMI04633 Torrubiella hemipterigena VHEMI04633 N
VDAG_09064 Verticillium dahliae VDAG_09064 N
SEPMUDRAFT_57525 Sphaerulina musiva SEPMUDRAFT_57525 N
SBOR_4351 Sclerotinia borealis SBOR_4351 N
S40288_01466 Stachybotrys chartarum S40288_01466 N
PV05_09070 Exophiala xenobiotica PV05_09070 N
CGGC5_2317 Colletotrichum gloeosporioides CGGC5_2317 N
GLRG_10923 Colletotrichum graminicola GLRG_10923 N
FVEG_01650 Fusarium verticillioides FVEG_01650 N
FPSE_05458 Fusarium pseudograminearum FPSE_05458 N
FOXG_02820 Fusarium oxysporum FOXG_02820 N
FGRRES_08135 Fusarium graminearum FGRRES_08135 N
FFUJ_06535 Fusarium fujikuroi FFUJ_06535 N
Cob_07663 Colletotrichum orbiculare Cob_07663 N
Cob_02860 Colletotrichum orbiculare Cob_02860 N