16668_YMR072W (Saccharomyces mikatae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 16668_YMR072W T335139_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF2
M00069_2.00 		Saccharomyces cerevisiae
NNCTCTAGASN
NSTCTAGAGNN		 PBM
Badis et al.(2008)
ABF2_2116 		0.638 0.853
ABF2
M07497_2.00 		Saccharomyces cerevisiae
TCTAGAN
NTCTAGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0266.1 		0.638 0.853
ABF2
M08605_2.00 		Saccharomyces cerevisiae
TCTAGAN
NTCTAGA		 Misc
DeBoer et al.(2011)
YMR072W_541 		0.638 0.853
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
16668_YMR072W Sox 43 111
16668_YMR072W Sox 116 182

Links

Other Sox family TFs
Other Saccharomyces mikatae TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA019970 Oryza indica BGIOSGA019970 N
BGIOSGA033038 Oryza indica BGIOSGA033038 N
OB10G18880 Oryza brachyantha OB10G18880 N
OBART10G11560 Oryza barthii OBART10G11560 N
OLONG_010183 Oryza longistaminata OLONG_010183 N
OMERI10G08570 Oryza meridionalis OMERI10G08570 N
ONIVA10G10740 Oryza nivara ONIVA10G10740 N
ORGLA10G0101900 Oryza glaberrima ORGLA10G0101900 N
ORUFI10G12060 Oryza rufipogon ORUFI10G12060 N
ORUFI10G12080 Oryza rufipogon ORUFI10G12080 N
OS10G0443800 Oryza sativa OS10G0443800 N
OS10G0444100 Oryza sativa OS10G0444100 N
Sb01g020596 Sorghum bicolor Sb01g020596 N
Si038928m.g Setaria italica Si038928m.g N
Pavir.Ia01842 Panicum virgatum Pavir.Ia01842 N
Pavir.Ib03323 Panicum virgatum Pavir.Ib03323 N