fgeneshTM_pg.4_#_200 (Tremella mesenterica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgeneshTM_pg.4_#_200 T335238_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.484 0.391
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.484 0.391
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.484 0.391
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.484 0.391
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.484 0.391
fmf-1
M02491_2.00 		Neurospora crassa
TCTTTGTY
RACAAAGA		 PBM
Weirauch et al.(2014)
pTH8941 		0.419 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgeneshTM_pg.4_#_200 Sox 336 405

Links

Other Sox family TFs
Other Tremella mesenterica TFs

363 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMEC011489 Anopheles melas AMEC011489 N 0.000
BTMF_0001476301 Brugia timori BTMF_0001476301 N 0.000
ANCCAN_09768 Ancylostoma caninum ANCCAN_09768 N 0.000
ACAC_0000775701 Angiostrongylus cantonensis ACAC_0000775701 N 0.000
LLOJ006332 Lutzomyia longipalpis LLOJ006332 N 0.000
BGLB013890 Biomphalaria glabrata BGLB013890 N 0.000
BGLB009417 Biomphalaria glabrata BGLB009417 N 0.000
BGLB006178 Biomphalaria glabrata BGLB006178 N 0.000
AQUA008818 Anopheles quadriannulatus AQUA008818 N 0.000
AMIN004125 Anopheles minimus AMIN004125 N 0.000
AMEM003504 Anopheles merus AMEM003504 N 0.000
AMEC021350 Anopheles melas AMEC021350 N 0.000
D915_01997 Fasciola hepatica D915_01997 N 0.000
AMAM001087 Anopheles maculatus AMAM001087 N 0.000
AFAF020113 Anopheles farauti AFAF020113 N 0.000
AEPI000237 Anopheles epiroticus AEPI000237 N 0.000
ADIR005529 Anopheles dirus ADIR005529 N 0.000
ACUA001666 Anopheles culicifacies ACUA001666 N 0.000
ACOM033136 Anopheles coluzzii ACOM033136 N 0.000
ACHR003840 Anopheles christyi ACHR003840 N 0.000
AATE016330 Anopheles atroparvus AATE016330 N 0.000
AALB008401 Anopheles albimanus AALB008401 N 0.000
SNAPOd2T00000013001 Oikopleura dioica SNAPOd2T00000013001 N 0.000
OFLC_0001290601 Onchocerca flexuosa OFLC_0001290601 N 0.000
TTAC_0001016601 Hydatigera taeniaeformis TTAC_0001016601 N 0.000
TCNE_0000673201 Toxocara canis TCNE_0000673201 N 0.000
TCLT_0000454301 Thelazia callipaeda TCLT_0000454301 N 0.000
TASK_0000051701 Taenia asiatica TASK_0000051701 N 0.000
SVUK_0000185901 Strongylus vulgaris SVUK_0000185901 N 0.000
SSLN_0002001801 Schistocephalus solidus SSLN_0002001801 N 0.000
SROB_0001536801 Schistosoma rodhaini SROB_0001536801 N 0.000
SMTD_0001448601 Schistosoma mattheei SMTD_0001448601 N 0.000
SCUD_0000076401 Schistosoma curassoni SCUD_0000076401 N 0.000
PXEA_0000210501 Protopolystoma xenopodis PXEA_0000210501 N 0.000
SNAPOd2T00000006001 Oikopleura dioica SNAPOd2T00000006001 N 0.000
nOo.2.0.1.g05402 Onchocerca ochengi nOo.2.0.1.g05402 N 0.000
nLs.2.1.2.g08039 Litomosoides sigmodontis nLs.2.1.2.g08039 N 0.000
NBR_0000440401 Nippostrongylus brasiliensis NBR_0000440401 N 0.000
nAv.1.0.1.g02461 Acanthocheilonema viteae nAv.1.0.1.g02461 N 0.000
L898_g20040 Steinernema monticolum L898_g20040 N 0.000
L892_g4790 Steinernema scapterisci L892_g4790 N 0.000
Hba_17474 Heterorhabditis bacteriophora Hba_17474 N 0.000
GPUH_0001622501 Gongylonema pulchrum GPUH_0001622501 N 0.000
EEL_0001066701 Elaeophora elaphi EEL_0001066701 N 0.000
ECANG7_03670 Echinococcus canadensis ECANG7_03670 N 0.000
GATA5 Echinops telfairi ENSETEG00000019185 N 0.000
ENSTNIG00000002085 Tetraodon nigroviridis ENSTNIG00000002085 N 0.000
GATA5 Pteropus vampyrus ENSPVAG00000011581 N 0.000
GATA3 Procavia capensis ENSPCAG00000005175 N 0.000
ENSMICG00000006751 Microcebus murinus ENSMICG00000006751 N 0.000
ENSMEUG00000011815 Macropus eugenii ENSMEUG00000011815 N 0.000
ENSMEUG00000011038 Macropus eugenii ENSMEUG00000011038 N 0.000
ENSMEUG00000004221 Macropus eugenii ENSMEUG00000004221 N 0.000
ENSLOCG00000005910 Lepisosteus oculatus ENSLOCG00000005910 N 0.000
ENSLACG00000006161 Latimeria chalumnae ENSLACG00000006161 N 0.000
ENSGMOG00000007710 Gadus morhua ENSGMOG00000007710 N 0.000
ENSTRUG00000001265 Takifugu rubripes ENSTRUG00000001265 N 0.000
GATA2 Cavia porcellus ENSCPOG00000009802 N 0.000
ENSCJAG00000020654 Callithrix jacchus ENSCJAG00000020654 N 0.000
ENSAPLG00000015903 Anas platyrhynchos ENSAPLG00000015903 N 0.000
ENSAMXG00000012389 Astyanax mexicanus ENSAMXG00000012389 N 0.000
E5Q_06531 Mixia osmundae E5Q_06531 N 0.000
CPIJ008461 Culex quinquefasciatus CPIJ008461 N 0.000
BGIBMGA000450 Bombyx mori BGIBMGA000450 N 0.000
ACEP16989 Atta cephalotes ACEP16989 N 0.000
ACEP15037 Atta cephalotes ACEP15037 N 0.000
WUBG_05471 Wuchereria bancrofti WUBG_05471 N 0.000
Alligator_sinensis_CCG019841.1 Alligator sinensis Alligator_sinensis_CCG019841.1 N 0.000
LDEC012262 Leptinotarsa decemlineata LDEC012262 N 0.000
LDEC000517 Leptinotarsa decemlineata LDEC000517 N 0.000
LCUP000677 Lucilia cuprina LCUP000677 N 0.000
Pvit_13887 Pogona vitticeps Pvit_13887 N 0.000
Ogr18767 Ophisaurus gracilis Ogr18767 N 0.000
Ogr02074 Ophisaurus gracilis Ogr02074 N 0.000
Ogr01516 Ophisaurus gracilis Ogr01516 N 0.000
Hsal_08742--XP_001121055.1_APIME Harpegnathos saltator Hsal_08742--XP_001121055.1_APIME N 0.000
Cmyd_10017525 Chelonia mydas Cmyd_10017525 N 0.000
Cflo_06216--XP_001121055.1_APIME Camponotus floridanus Cflo_06216--XP_001121055.1_APIME N 0.000
CpipJ_CPIJ008461 Culex pipiens CpipJ_CPIJ008461 N 0.000
WBGene00241813 Onchocerca volvulus WBGene00241813 N 0.000
SMAR009870 Strigamia maritima SMAR009870 N 0.000
NV16862 Nasonia vitripennis NV16862 N 0.000
MESCA009585 Megaselia scalaris MESCA009585 N 0.000
MESCA005245 Megaselia scalaris MESCA005245 N 0.000
KGM_21940 Danaus plexippus KGM_21940 N 0.000
ISCW005453 Ixodes scapularis ISCW005453 N 0.000
GB41785 Apis mellifera GB41785 N 0.000
GATA5 Tursiops truncatus ENSTTRG00000011109 N 0.000
ENSTSYG00000003698 Tarsius syrichta ENSTSYG00000003698 N 0.000