LjT35D08.150.nd (Lotus japonicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 LjT35D08.150.nd T335269_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.690 0.754
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjT35D08.150.nd Sox 50 119

Links

Other Sox family TFs
Other Lotus japonicus TFs

324 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10018153m.g Citrus clementina Ciclev10018153m.g N 0.000
Cla012038 Citrullus lanatus Cla012038 N 0.000
Pm016121 Prunus mume Pm016121 N 0.000
30131.m007029 Ricinus communis 30131.m007029 N 0.000
cassava38785.m1 Manihot esculenta cassava38785.m1 N 0.000
Cucsa.087900 Cucumis sativus Cucsa.087900 N 0.000
mgf025393m Mimulus guttatus mgf025393m N 0.000
Aquca_011_00061 Aquilegia coerulea Aquca_011_00061 N 0.000
Aquca_021_00065 Aquilegia coerulea Aquca_021_00065 N 0.000
Traes_2BS_D32231DB0 Triticum aestivum Traes_2BS_D32231DB0 N 0.000
Eucgr.I01625 Eucalyptus grandis Eucgr.I01625 N 0.000
evm.TU.supercontig_70.116 Carica papaya evm.TU.supercontig_70.116 N 0.000
gene01356-v1.0-hybrid Fragaria vesca gene01356-v1.0-hybrid N 0.000
Gorai.006G044300 Gossypium raimondii Gorai.006G044300 N 0.000
Lus10012554.g Linum usitatissimum Lus10012554.g N 0.000
Lus10041540.g Linum usitatissimum Lus10041540.g N 0.000
orange1.1g045762m.g Citrus sinensis orange1.1g045762m.g N 0.000
Pavir.J25769 Panicum virgatum Pavir.J25769 N 0.000
OPUNC11G12230 Oryza punctata OPUNC11G12230 N 0.000
GLYMA16G05751 Glycine max GLYMA16G05751 N 0.000
GLYMA19G26735 Glycine max GLYMA19G26735 N 0.000
GRMZM2G342217 Zea mays GRMZM2G342217 N 0.000
LPERR11G11520 Leersia perrieri LPERR11G11520 N 0.000
MTR_7g027190 Medicago truncatula MTR_7g027190 N 0.000
OBART11G14550 Oryza barthii OBART11G14550 N 0.000
OGLUM11G14080 Oryza glumaepatula OGLUM11G14080 N 0.000
ONIVA11G13990 Oryza nivara ONIVA11G13990 N 0.000
BRADI4G18390 Brachypodium distachyon BRADI4G18390 N 0.000
ORGLA11G0124900 Oryza glaberrima ORGLA11G0124900 N 0.000
PGSC0003DMG400020243 Solanum tuberosum PGSC0003DMG400020243 N 0.000
POPTR_0001s33360 Populus trichocarpa POPTR_0001s33360 N 0.000
PRUPE_ppa024399mg Prunus persica PRUPE_ppa024399mg N 0.000
Sb05g018070 Sorghum bicolor Sb05g018070 N 0.000
Si027708m.g Setaria italica Si027708m.g N 0.000
Solyc02g094340.1 Solanum lycopersicum Solyc02g094340.1 N 0.000
TCM_017269 Theobroma cacao TCM_017269 N 0.000