CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GPLIN_000066100
(
Globodera pallida
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
GPLIN_000066100
T336329_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GPLIN_000066100
Sox
7
59
KQTEPIKTNDELKKVAAETGQQWRQMTDAEKQPYVDQTQGNIAAYHKEMAEWK
Links
Other
Sox
family TFs
Other
Globodera pallida
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HMEL002398
Heliconius melpomene
HMEL002398
I
0.429
CpipJ_CPIJ018938
Culex pipiens
CpipJ_CPIJ018938
N
0.419
Cob_06475
Colletotrichum orbiculare
Cob_06475
N
0.445
CPIJ018938
Culex quinquefasciatus
CPIJ018938
N
0.419
MAC_01051
Metarhizium acridum
MAC_01051
N
0.434
estExt_fgenesh4_pg.C_650094
Volvox carteri
estExt_fgenesh4_pg.C_650094
N
0.437
GPLIN_000530400
Globodera pallida
GPLIN_000530400
N
0.480