CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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tbx20
(
Gasterosteus aculeatus
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
ENSGACG00000012706
T339913_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbx20
M00835_2.00
Mus musculus
NRRGTGTBAN
NTVACACYYN
PBM
Weirauch et al.(2013)
pTH3777
0.907
0.967
Tbx20
M09430_2.00
Mus musculus
NDSTGNTGACAGSN
NSCTGTCANCASHN
Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C
0.907
0.967
Tbx20
M09650_2.00
Mus musculus
SCTGTCADCASN
NSTGHTGACAGS
Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636
0.907
0.967
TBX20
M03565_2.00
Homo sapiens
AGGTGTKARVGYGTGA
TCACRCBYTMACACCT
SELEX
Jolma et al.(2013)
TBX20_1
0.907
0.962
TBX20
M03566_2.00
Homo sapiens
AGGTGTGAAWDTSACACBT
AVGTGTSAHWTTCACACCT
SELEX
Jolma et al.(2013)
TBX20_2
0.907
0.962
TBX20
M03567_2.00
Homo sapiens
NNNDAGGTGTGAAND
HNTTCACACCTHNNN
SELEX
Jolma et al.(2013)
TBX20_3
0.907
0.962
TBX20
M03568_2.00
Homo sapiens
DAGGTGTGAWR
YWTCACACCTH
SELEX
Jolma et al.(2013)
TBX20_4
0.907
0.962
TBX20
M03569_2.00
Homo sapiens
AGGTGTKANGKTGTSA
TSACAMCNTMACACCT
SELEX
Jolma et al.(2013)
TBX20_5
0.907
0.962
TBX20
M05813_2.00
Homo sapiens
DAGGTGTKARSGTGTGAA
TTCACACSYTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1
0.907
0.962
TBX20
M05814_2.00
Homo sapiens
NAGGTGTGAAWTTCACACCTN
NAGGTGTGAAWTTCACACCTN
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2
0.907
0.962
TBX20
M05817_2.00
Homo sapiens
DRRGTGTBADVGYGTBAN
NTVACRCBHTVACACYYH
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1
0.907
0.962
TBX20
M05818_2.00
Homo sapiens
WTCACACYTAGGTGTKAM
KTMACACCTARGTGTGAW
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2
0.907
0.962
TBX20
M11385_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX20_05
0.907
0.962
TBX20
M05815_2.00
Homo sapiens
DAGGTGTKAASGYGTKAA
TTMACRCSTTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1
0.907
0.962
TBX20
M05816_2.00
Homo sapiens
DASGTGTGAWWWTCACACCTH
DAGGTGTGAWWWTCACACSTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2
0.907
0.962
TBX20
M05819_2.00
Homo sapiens
DRGGYGTBARVGYGTKAN
NTMACRCBYTVACRCCYH
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1
0.907
0.962
TBX20
M05820_2.00
Homo sapiens
TTMACRCCTAVGTGTGAA
TTCACACBTAGGYGTKAA
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2
0.907
0.962
mid
M03994_2.00
Drosophila melanogaster
DAGGTGTKAN
NTMACACCTH
SELEX
Nitta et al.(2015)
mid_1
0.792
0.720
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.770
0.659
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.744
0.604
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA
TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.744
0.604
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT
AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.744
0.604
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA
TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.744
0.604
TBX5
M11374_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.744
0.604
TBX5
M11375_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.744
0.604
Tbx5
M11387_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.744
0.604
TBX5
M11376_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.744
0.604
TBX5
M11377_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.744
0.604
TBX18
M05797_2.00
Homo sapiens
DDAGGTGTGARV
BYTCACACCTHH
SELEX
Yin et al.(2017)
TBX18_eDBD_HT-SELEX
0.742
0.648
TBX18
M11380_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX18_01
0.742
0.648
TBX18
M05798_2.00
Homo sapiens
NDAGGYGTGAAN
NTTCACRCCTHN
SELEX
Yin et al.(2017)
TBX18_eDBD_Methyl-HT-SELEX
0.742
0.648
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000016797
T-box
98
284
CSLETKELWDKFHELGTEMIITKSGRRMFPTIRVSFSGVDQDSKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHPDSPFTGEQLVKQMVSFEKVKLTNNELDQHGHIILNSMHKYQPRVHIIKKKEHTASLLNFKSEEFRTFVFVETVFTAVTAYQNQLITKLKIDSNPFAKGFRD
Links
Other
T-box
family TFs
Other
Gasterosteus aculeatus
TFs
276 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bcin05g07400
Botrytis cinerea
Bcin05g07400
D
NCU02576
Neurospora crassa
NCU02576
D
VDBG_03734
Verticillium albo atrum
VDBG_03734
I
A1O1_05565
Capronia coronata
A1O1_05565
I
A1O3_09206
Capronia epimyces
A1O3_09206
I
A1O5_09341
Cladophialophora psammophila
A1O5_09341
I
A1O7_07556
Cladophialophora yegresii
A1O7_07556
I
A1O9_09292
Exophiala aquamarina
A1O9_09292
I
ACRE_047960
Acremonium chrysogenum
ACRE_047960
I
AOL_s00078g183
Arthrobotrys oligospora
AOL_s00078g183
I
BBA_05317
Beauveria bassiana
BBA_05317
I
BDDG_04662
Blastomyces dermatitidis
BDDG_04662
I
ACLA_057300
Aspergillus clavatus
CADACLAG00005493
I
ACLA_076330
Aspergillus clavatus
CADACLAG00007259
I
CADAFLAG00013329
Aspergillus flavus
CADAFLAG00013329
I
AFUA_8G03970
Aspergillus fumigatus
CADAFUAG00003044
I
ANIA_01406
Aspergillus nidulans
CADANIAG00008016
I
CADAORAG00009941
Aspergillus oryzae
CADAORAG00009941
I
NFIA_096670
Neosartorya fischeri
CADNFIAG00009220
I
CCM_07661
Cordyceps militaris
CCM_07661
I
CFIO01_10853
Colletotrichum fioriniae
CFIO01_10853
I
CGGC5_11802
Colletotrichum gloeosporioides
CGGC5_11802
I
CH063_10117
Colletotrichum higginsianum
CH063_10117
I
Cob_13345
Colletotrichum orbiculare
Cob_13345
I
COCC4DRAFT_131281
Bipolaris maydis
COCC4DRAFT_131281
I
COCCADRAFT_85714
Bipolaris zeicola
COCCADRAFT_85714
I
COCMIDRAFT_104594
Bipolaris oryzae
COCMIDRAFT_104594
I
COCSADRAFT_92438
Bipolaris sorokiniana
COCSADRAFT_92438
I
COCVIDRAFT_94490
Bipolaris victoriae
COCVIDRAFT_94490
I
CSUB01_12250
Colletotrichum sublineola
CSUB01_12250
I
CTHT_0054920
Chaetomium thermophilum
CTHT_0054920
I
DRE_06035
Drechslerella stenobrocha
DRE_06035
I
EURHEDRAFT_454510
Aspergillus ruber
EURHEDRAFT_454510
I
EV44_g4546
Erysiphe necator
EV44_g4546
I
F503_05162
Ophiostoma piceae uamh
F503_05162
I
FFUJ_04086
Fusarium fujikuroi
FFUJ_04086
I
FGRRES_17192
Fusarium graminearum
FGRRES_17192
I
FOXG_05918
Fusarium oxysporum
FOXG_05918
I
FPSE_09716
Fusarium pseudograminearum
FPSE_09716
I
G647_02529
Cladophialophora carrionii
G647_02529
I
GGTG_00966
Gaeumannomyces graminis
GGTG_00966
I
GLRG_00660
Colletotrichum graminicola
GLRG_00660
I
GMDG_00720
Pseudogymnoascus destructans
GMDG_00720
I
GSTUM_00008737001
Tuber melanosporum
GSTUM_00008737001
I
H072_5123
Dactylellina haptotyla
H072_5123
I
HCBG_04788
Histoplasma capsulatum
HCBG_04788
I
HMPREF1120_07798
Exophiala dermatitidis
HMPREF1120_07798
I
HMPREF1541_08013
Cyphellophora europaea
HMPREF1541_08013
I
MAC_06599
Metarhizium acridum
MAC_06599
I
MAJ_09934
Metarhizium majus
MAJ_09934
I
MAM_07569
Metarhizium album
MAM_07569
I
MANI_121568
Metarhizium anisopliae
MANI_121568
I
MAPG_07711
Magnaporthe poae
MAPG_07711
I
MBM_03422
Marssonina brunnea
MBM_03422
I
MBR_08632
Metarhizium brunneum
MBR_08632
I
MGG_17060
Magnaporthe oryzae
MGG_17060
I
MGU_07934
Metarhizium guizhouense
MGU_07934
I
MPH_00528
Macrophomina phaseolina
MPH_00528
I
MYCTH_2295212
Myceliophthora thermophila
MYCTH_2295212
I
NechaG31542
Fusarium solani
NechaG31542
I
NEUTE1DRAFT_73358
Neurospora tetrasperma
NEUTE1DRAFT_73358
I
OIDMADRAFT_43859
Oidiodendron maius
OIDMADRAFT_43859
I
PAAG_07780
Paracoccidioides sp lutzii
PAAG_07780
I
PABG_00345
Paracoccidioides brasiliensis
PABG_00345
I
PCH_Pc22g10180
Penicillium rubens
PCH_Pc22g10180
I
PDE_00983
Penicillium oxalicum
PDE_00983
I
PEX1_034110
Penicillium expansum
PEX1_034110
I
PFICI_13658
Pestalotiopsis fici
PFICI_13658
I
PITC_007110
Penicillium italicum
PITC_007110
I
PMAA_060350
Talaromyces marneffei
PMAA_060350
I
PODANS_1_8960
Podospora anserina
PODANS_1_8960
I
PTT_01647
Pyrenophora teres
PTT_01647
I
PV04_08029
Capronia semiimmersa
PV04_08029
I
PV05_10063
Exophiala xenobiotica
PV05_10063
I
PV06_09524
Exophiala oligosperma
PV06_09524
I
PV07_11741
Cladophialophora immunda
PV07_11741
I
PV08_03946
Exophiala spinifera
PV08_03946
I
PV09_04867
Verruconis gallopava
PV09_04867
I
PV10_06666
Exophiala mesophila
PV10_06666
I
PV11_08966
Exophiala sideris
PV11_08966
I
S40285_06932
Stachybotrys chlorohalonata
S40285_06932
I
S40288_06487
Stachybotrys chartarum
S40288_06487
I
SAPIO_CDS5525
Scedosporium apiospermum
SAPIO_CDS5525
I
SBOR_8563
Sclerotinia borealis
SBOR_8563
I
SETTUDRAFT_160027
Setosphaeria turcica
SETTUDRAFT_160027
I
SMAC_05786
Sordaria macrospora
SMAC_05786
I
SS1G_12158
Sclerotinia sclerotiorum
SS1G_12158
I
THITE_2122040
Thielavia terrestris
THITE_2122040
I
TRIATDRAFT_323311
Trichoderma atroviride
TRIATDRAFT_323311
I
TRIREDRAFT_108940
Trichoderma reesei
TRIREDRAFT_108940
I
TRIVIDRAFT_85198
Trichoderma virens
TRIVIDRAFT_85198
I
TSTA_011180
Talaromyces stipitatus
TSTA_011180
I
U727_00431300241
Penicillium solitum
U727_00431300241
I
UCRNP2_4523
Neofusicoccum parvum
UCRNP2_4523
I
UV8b_6694
Ustilaginoidea virens
UV8b_6694
I
V499_02224
Pseudogymnoascus pannorum
V499_02224
I
VDBG_03734
Verticillium alfalfae
VDBG_03734
I
VHEMI03709
Torrubiella hemipterigena
VHEMI03709
I
W97_03429
Coniosporium apollinis
W97_03429
I
X797_008205
Metarhizium robertsii
X797_008205
I
Z517_03147
Fonsecaea pedrosoi
Z517_03147
I
Z518_09159
Rhinocladiella mackenziei
Z518_09159
I
Z519_01226
Cladophialophora bantiana
Z519_01226
I
e_gw1.1.1349.1
Nectria haematococca
e_gw1.1.1349.1
I
e_gw1.3.38.1
Cochliobolus heterostrophus C5
e_gw1.3.38.1
I
estExt_fgenesh2_pg.C_20614
Neurospora discreta
estExt_fgenesh2_pg.C_20614
I
estExt_fgenesh1_pg.C_40812
Cryphonectria parasitica
estExt_fgenesh1_pg.C_40812
I
fgenesh1_pm.00168_#_532
Aspergillus carbonarius
fgenesh1_pm.00168_#_532
I
Pc22g10180
Penicillium chrysogenum
Pc22g10180
I
PMAA_060350
Penicillium marneffei
PMAA_060350
I