CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Sakowv30012255m.g *(Saccoglossus kowalevskii)* T-box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00907 (T-box)	IPR001699	Sakowv30012255m.g	T341197_2.00	JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
XP_001195863 M02498_2.00	Strongylocentrotus purpuratus	AGGTGTBA	TVACACCT	PBM Weirauch et al.(2014) pTH9340	0.865	0.901
estExt_fgenesh2_pg.C_1570024 M01030_2.00	Branchiostoma floridae	NHNDCACNHN	NDNGTGHNDN	PBM SebePedros et al.(2013) pTH9244	0.815	0.834
XP_008203914.1 M01029_2.00	Nasonia vitripennis	AGGTGTBA	TVACACCT	PBM SebePedros et al.(2013) pTH9336	0.814	0.685
Tbx5 M00833_2.00	Mus musculus	AGGTGTBA	TVACACCT	PBM Weirauch et al.(2013) pTH3775	0.802	0.702
TBX5 M03552_2.00	Homo sapiens	AGGTGTBA	TVACACCT	SELEX Jolma et al.(2013) TBX5_1	0.802	0.702
TBX5 M03553_2.00	Homo sapiens	AGGTGTKANWWNTVACACCT	AGGTGTBANWWNTMACACCT	SELEX Jolma et al.(2013) TBX5_2	0.802	0.702
Tbx5 M09649_2.00	Mus musculus	AGGTGHBA	TVDCACCT	Misc Heinz et al.(2010) HL1-Tbx5.biotin_GSE21529	0.802	0.702
TBX5 M11374_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TBX5_01	0.802	0.702
TBX5 M11375_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TBX5_02	0.802	0.702
Tbx5 M11387_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TBX5_05	0.802	0.702
TBX5 M11376_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TBX5_Q2	0.802	0.702
TBX5 M11377_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TBX5_Q5	0.802	0.702
Tbx4 M00831_2.00	Mus musculus	AGGTGTBA	TVACACCT	PBM Weirauch et al.(2013) pTH3973	0.788	0.685
TBX4 M03558_2.00	Homo sapiens	AGGTGTBA	TVACACCT	SELEX Jolma et al.(2013) TBX4_1	0.788	0.685
TBX4 M03559_2.00	Homo sapiens	AGGTGTBANWWNTVACACBT	AVGTGTBANWWNTVACACCT	SELEX Jolma et al.(2013) TBX4_2	0.788	0.685
Tbx2 M00830_2.00	Mus musculus	NYVDCACBHN	NDVGTGHBRN	PBM Weirauch et al.(2013) pTH3751	0.785	0.707
TBX2 M03556_2.00	Homo sapiens	GGTGTKADDWNTVACACB	VGTGTBANWHHTMACACC	SELEX Jolma et al.(2013) TBX2_1	0.785	0.707
TBX2 M03557_2.00	Homo sapiens	NAGGTGTBAWN	NWTVACACCTN	SELEX Jolma et al.(2013) TBX2_2	0.785	0.707
TBX2 M05799_2.00	Homo sapiens	NNVRCRCNNN	NNNGYGYBNN	SELEX Yin et al.(2017) TBX2_eDBD_HT-SELEX	0.785	0.707
Tbx2 M08044_2.00	Mus musculus	GCHYBCTGGGADHTGTAGTYH	DRACTACADHTCCCAGVRDGC	ChIP-seq Chen et al.(2011) SRP001585_Tbx2	0.785	0.707
TBX2 M11381_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TBX2_Q2	0.785	0.707
TBX2 M11382_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TBX2_Q5	0.785	0.707
TBX2 M05800_2.00	Homo sapiens	NNVRCRCBNN	NNVGYGYBNN	SELEX Yin et al.(2017) TBX2_eDBD_Methyl-HT-SELEX	0.785	0.707
Tbx3 M00834_2.00	Mus musculus	NHNDCACNHN	NDNGTGHNDN	PBM Weirauch et al.(2013) pTH3998	0.784	0.702
TBX3 M05801_2.00	Homo sapiens	NDSGTGTBRN	NYVACACSHN	SELEX Yin et al.(2017) TBX3_eDBD_HT-SELEX	0.784	0.702
TBX3 M09426_2.00	Homo sapiens	DVDGGTGBNAR	YTNVCACCHBH	Misc Kulakovskiy et al.(2013) TBX3_HUMAN.H11MO.0.C	0.784	0.702
Tbx3 M09429_2.00	Mus musculus	RRGGTGBBR	YVVCACCYY	Misc Kulakovskiy et al.(2013) TBX3_MOUSE.H11MO.0.B	0.784	0.702
TBX3 M05802_2.00	Homo sapiens	DAGGTGTKAN	NTMACACCTH	SELEX Yin et al.(2017) TBX3_eDBD_Methyl-HT-SELEX	0.784	0.702
TBX20 M03565_2.00	Homo sapiens	AGGTGTKARVGYGTGA	TCACRCBYTMACACCT	SELEX Jolma et al.(2013) TBX20_1	0.783	0.680
TBX20 M03566_2.00	Homo sapiens	AGGTGTGAAWDTSACACBT	AVGTGTSAHWTTCACACCT	SELEX Jolma et al.(2013) TBX20_2	0.783	0.680
TBX20 M03567_2.00	Homo sapiens	NNNDAGGTGTGAAND	HNTTCACACCTHNNN	SELEX Jolma et al.(2013) TBX20_3	0.783	0.680
TBX20 M03568_2.00	Homo sapiens	DAGGTGTGAWR	YWTCACACCTH	SELEX Jolma et al.(2013) TBX20_4	0.783	0.680
TBX20 M03569_2.00	Homo sapiens	AGGTGTKANGKTGTSA	TSACAMCNTMACACCT	SELEX Jolma et al.(2013) TBX20_5	0.783	0.680
TBX20 M05813_2.00	Homo sapiens	DAGGTGTKARSGTGTGAA	TTCACACSYTMACACCTH	SELEX Yin et al.(2017) TBX20_eDBD_HT-SELEX_1	0.783	0.680
TBX20 M05814_2.00	Homo sapiens	NAGGTGTGAAWTTCACACCTN	NAGGTGTGAAWTTCACACCTN	SELEX Yin et al.(2017) TBX20_eDBD_HT-SELEX_2	0.783	0.680
TBX20 M05817_2.00	Homo sapiens	DRRGTGTBADVGYGTBAN	NTVACRCBHTVACACYYH	SELEX Yin et al.(2017) TBX20_FL_HT-SELEX_1	0.783	0.680
TBX20 M05818_2.00	Homo sapiens	WTCACACYTAGGTGTKAM	KTMACACCTARGTGTGAW	SELEX Yin et al.(2017) TBX20_FL_HT-SELEX_2	0.783	0.680
TBX20 M11385_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TBX20_05	0.783	0.680
TBX20 M05815_2.00	Homo sapiens	DAGGTGTKAASGYGTKAA	TTMACRCSTTMACACCTH	SELEX Yin et al.(2017) TBX20_eDBD_Methyl-HT-SELEX_1	0.783	0.680
TBX20 M05816_2.00	Homo sapiens	DASGTGTGAWWWTCACACCTH	DAGGTGTGAWWWTCACACSTH	SELEX Yin et al.(2017) TBX20_eDBD_Methyl-HT-SELEX_2	0.783	0.680
TBX20 M05819_2.00	Homo sapiens	DRGGYGTBARVGYGTKAN	NTMACRCBYTVACRCCYH	SELEX Yin et al.(2017) TBX20_FL_Methyl-HT-SELEX_1	0.783	0.680
TBX20 M05820_2.00	Homo sapiens	TTMACRCCTAVGTGTGAA	TTCACACBTAGGYGTKAA	SELEX Yin et al.(2017) TBX20_FL_Methyl-HT-SELEX_2	0.783	0.680
Tbx20 M00835_2.00	Mus musculus	NRRGTGTBAN	NTVACACYYN	PBM Weirauch et al.(2013) pTH3777	0.783	0.674
Tbx20 M09430_2.00	Mus musculus	NDSTGNTGACAGSN	NSCTGTCANCASHN	Misc Kulakovskiy et al.(2013) TBX20_MOUSE.H11MO.0.C	0.783	0.674
Tbx20 M09650_2.00	Mus musculus	SCTGTCADCASN	NSTGHTGACAGS	Misc Heinz et al.(2010) Heart-Tbx20_GSE29636	0.783	0.674
TBX2 M02495_2.00	Gasterosteus aculeatus	NNVDCACNHN	NDNGTGHBNN	PBM Weirauch et al.(2014) pTH9182	0.753	0.691
TBX2 M02496_2.00	Takifugu rubripes	DAGGTGTBRN	NYVACACCTH	PBM Weirauch et al.(2014) pTH9289	0.753	0.685
TBX21 M03546_2.00	Homo sapiens	GGTGTGAHDTMACACY	RGTGTKAHDTCACACC	SELEX Jolma et al.(2013) TBX21_1	0.752	0.580
TBX21 M03547_2.00	Homo sapiens	DAGGTGTGAW	WTCACACCTH	SELEX Jolma et al.(2013) TBX21_2	0.752	0.580
TBX21 M03548_2.00	Homo sapiens	TMACACYTNNDAGGTGTGA	TCACACCTHNNARGTGTKA	SELEX Jolma et al.(2013) TBX21_3	0.752	0.580
TBX21 M03549_2.00	Homo sapiens	GGTGTGAWATCACACC	GGTGTGATWTCACACC	SELEX Jolma et al.(2013) TBX21_4	0.752	0.580
TBX21 M03550_2.00	Homo sapiens	DAGGTGTGAW	WTCACACCTH	SELEX Jolma et al.(2013) TBX21_5	0.752	0.580
TBX21 M03551_2.00	Homo sapiens	TSACACCWNMRAGGTGTGA	TCACACCTYKNWGGTGTSA	SELEX Jolma et al.(2013) TBX21_6	0.752	0.580
TBX21 M05793_2.00	Homo sapiens	DAGGTGTKAN	NTMACACCTH	SELEX Yin et al.(2017) TBX21_eDBD_HT-SELEX	0.752	0.580
TBX21 M09425_2.00	Homo sapiens	NDSDRGSTGWBRN	NYVWCASCYHSHN	Misc Kulakovskiy et al.(2013) TBX21_HUMAN.H11MO.0.A	0.752	0.580
Tbx21 M09428_2.00	Mus musculus	DNDDSTGWSDND	HNHSWCASHHNH	Misc Kulakovskiy et al.(2013) TBX21_MOUSE.H11MO.0.A	0.752	0.580
Tbx21 M09648_2.00	Mus musculus	ADGTGWSAHN	NDTSWCACHT	Misc Heinz et al.(2010) CD8-Tbet_GSE33802	0.752	0.580
TBX21 M05794_2.00	Homo sapiens	DASGTGTKAW	WTMACACSTH	SELEX Yin et al.(2017) TBX21_eDBD_Methyl-HT-SELEX	0.752	0.580
Eomes M00215_2.00	Mus musculus	RDGTGYBANN	NNTVRCACHY	PBM Badis et al.(2009) Eomes_0921	0.739	0.530
EOMES M03563_2.00	Homo sapiens	DAGGTGTGAWNNN	NNNWTCACACCTH	SELEX Jolma et al.(2013) EOMES_1	0.739	0.525
EOMES M03564_2.00	Homo sapiens	TVACACNTNNNDRNGTGTGA	TCACACNYHNNNANGTGTBA	SELEX Jolma et al.(2013) EOMES_2	0.739	0.525
EOMES M02752_2.00	Homo sapiens	AGGTGTGAW	WTCACACCT	SELEX Jolma et al.(2010) EOMES_monomer	0.739	0.525
EOMES M05807_2.00	Homo sapiens	DAGGTGTGAN	NTCACACCTH	SELEX Yin et al.(2017) EOMES_eDBD_HT-SELEX	0.739	0.525
EOMES M09647_2.00	Homo sapiens	ARGTGWKAAN	NTTMWCACYT	Misc Heinz et al.(2010) H9-Eomes_GSE26097	0.739	0.525
EOMES M05808_2.00	Homo sapiens	NABGTGYKAH	DTMRCACVTN	SELEX Yin et al.(2017) EOMES_eDBD_Methyl-HT-SELEX	0.739	0.525
For this family, TFs with SR scores > 0.734* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
23954268_peptide	T-box	90	270	VNLEGKELWTKFHEIGTEMIITKAGRRMFPTFRASVTGLDPHAKYIMLMDIVPVDDTRYKYHNSEWVVTGKAEPHMPGRLYIHPDSPATGAVWMKQVVSFHKMKLTNNNLDQHGHIVLNSMHKYQPRFHIVQANDVFSLRWNSFSTYAFQETQFIAVTAYQNEKITQLKIDNNPFAKGFRD

Links
Other T-box family TFs
Other *Saccoglossus kowalevskii* TFs

479 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

Sakowv30012255m.g (Saccoglossus kowalevskii) T-box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

479 Related TFs

Sakowv30012255m.g **(Saccoglossus kowalevskii)
T-box**