CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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vegt
(
Xenopus tropicalis
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
XB-GENE-1033829
T341272_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.735
0.580
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN
NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.735
0.580
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI67867
T-box
50
230
ASLEDQDLWAQFHQEGTEMIITKSGRRMFPQCKIRLFGLHPYAKYMLLVDFVPLDNFRYKWNKNQWEAAGKAEPHPPCRTYVHPDSPAPGAHWMKDAICFQKLKLTNNTLDQQGHIILHSMHRYKPRFHVVQSDDMYNSPWGLVQVFSFPETEFTAVTAYQNEKITKLKINHNPFAKGFRE
AAK00597
T-box
50
230
ASLEDQVLWAQFHQEGTEMIITKSGRRMLPQCKIRLFGLHPYAKYMLLVDFVPLDNFRYKWNKNQWEAAGKAEPHPPCRTYVHPDSPAPGAHWMKDAICFQKLKLTNNTLDQQGHIILHSMHRYKPRFHVVQSDDMYNSPWGLVQVFSFPETEFTAVTAYQNEKITKLKINHNPFAKGFRE
CAJ82211
T-box
50
230
ASLEDQDLWAQFHQEGTEMIITKSGRRMFPQCKIRLFGLHPYAKYMLLVDFVPLDNFRYKWNKNQWEAAGKAEPHPPCRTYVHPDSPAPGAHWMKDAICFQKLKLTNNTLDQQGHIILHSMHRYKPRFHVVQSDDMYNSPWGLVQVFSFPETEFTAVTAYQNEKITKLKINHNPFAKGFRE
Links
Other
T-box
family TFs
Other
Xenopus tropicalis
TFs
58 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy