GSMUA_Achr7G01480_001 (Musa acuminata)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 GSMUA_Achr7G01480_001 T342589_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.841 0.841
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.841 0.841
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.841 0.841
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.829 0.829
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.829 0.829
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.829 0.829
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.829 0.829
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.829 0.829
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.829 0.829
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.829 0.829
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.829 0.829
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.829 0.829
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.829 0.829
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr7P01480_001 TBP 54 133
GSMUA_Achr7P01480_001 TBP 141 224

Links

Other TBP family TFs
Other Musa acuminata TFs

767 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RO3G_04517 Rhizopus oryzae RO3G_04517 N
RO3G_07916 Rhizopus oryzae RO3G_07916 N
GLOINDRAFT_319860 Rhizophagus irregularis GLOINDRAFT_319860 N
PFL1_03417 Pseudozyma flocculosa PFL1_03417 N
UM00750 Ustilago maydis UM00750 N
estExt_fgeneshPB_pg.C_10936 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_10936 N
estExt_fgeneshPB_pg.C_110133 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_110133 N
estExt_fgeneshPB_pg.C_30269 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_30269 N
fgeneshMC_pg.10_#_227 Mucor circinelloides fgeneshMC_pg.10_#_227 N
fgeneshMC_pg.4_#_438 Mucor circinelloides fgeneshMC_pg.4_#_438 N
fgeneshPB_pg.30__104 Phycomyces blakesleeanus fgeneshPB_pg.30__104 N