Ocbimv22013703m.g (Octopus bimaculoides)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Ocbimv22013703m.g T343135_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.916 0.916
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.916 0.916
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.916 0.916
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.916 0.916
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.916 0.916
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.916 0.916
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.916 0.916
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.916 0.916
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.916 0.916
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.916 0.916
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.808 0.808
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.808 0.808
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22013703m.p TBP 72 154
Ocbimv22013703m.p TBP 162 245

Links

Other TBP family TFs
Other Octopus bimaculoides TFs

761 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_Genemark1.C_60286 Coccomyxa subellipsoidea C169 estExt_Genemark1.C_60286 I
TGME49_075480 Toxoplasma gondii TGME49_075480 I
TRIATDRAFT_33700 Trichoderma atroviride TRIATDRAFT_33700 I
VHEMI03471 Torrubiella hemipterigena VHEMI03471 I
cgd5_110 Cryptosporidium parvum cgd5_110 I
Chro.50385 Cryptosporidium hominis Chro.50385 I
CMU_031780 Cryptosporidium muris CMU_031780 I
NCLIV_052910 Neospora caninum NCLIV_052910 I
PY03148 Plasmodium yoelii PY03148 I
e_gw1.3.682.1 Mycosphaerella fijiensis e_gw1.3.682.1 I
estExt_fgenesh4_pg.C_570064 Volvox carteri estExt_fgenesh4_pg.C_570064 I
estExt_Genewise1Plus.C_10250 Chlorella NC64A estExt_Genewise1Plus.C_10250 I
estExt_Genewise1Plus.C_chr_91101 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_91101 I
fgeneshHS_kg.scaffold_62000007 Naegleria gruberi fgeneshHS_kg.scaffold_62000007 I
PYU1_G012024 Pythium ultimum PYU1_G012024 I
SNAPOd2T00000694001 Oikopleura dioica SNAPOd2T00000694001 I
EDO05900.1 Babesia bovis EDO05900.1 I
estExt_fgenesh1_pg.C_140143 Phytophthora capsici estExt_fgenesh1_pg.C_140143 I
estExt_fgeneshCV_pg.C_60186 Chlorella vulgaris estExt_fgeneshCV_pg.C_60186 I
TA17065 Theileria annulata TA17065 I
TP01_1059 Theileria parva TP01_1059 I
BXY_0883400 Bursaphelenchus xylophilus BXY_0883400 I
MhA1_Contig70.frz3.gene35 Meloidogyne hapla MhA1_Contig70.frz3.gene35 I
PTRK_0001004600 Parastrongyloides trichosuri PTRK_0001004600 I
SPAL_0001703200 Strongyloides papillosus SPAL_0001703200 I
SSTP_0000058200 Strongyloides stercoralis SSTP_0000058200 I
SVE_1909000 Strongyloides venezuelensis SVE_1909000 I
HpaG807540 Hyaloperonospora arabidopsidis HpaG807540 I
ALNC14_009350 Albugo laibachii ALNC14_009350 I
BBA_00468 Beauveria bassiana BBA_00468 I
CHLREDRAFT_129649 Chlamydomonas reinhardtii CHLREDRAFT_129649 I
CPUR_07562 Claviceps purpurea CPUR_07562 I
DOTSEDRAFT_74195 Dothistroma septosporum DOTSEDRAFT_74195 I
ENSCING00000007995 Ciona intestinalis ENSCING00000007995 I
ENSCSAVG00000010518 Ciona savignyi ENSCSAVG00000010518 I
F443_00813 Phytophthora parasitica F443_00813 I
fgenesh_scip_prom.46568.4683 Phytophthora kernoviae fgenesh_scip_prom.46568.4683 I
GSPATT00020891001 Paramecium tetraurelia GSPATT00020891001 I
GSPATT00021821001 Paramecium tetraurelia GSPATT00021821001 I
GUITHDRAFT_164718 Guillardia theta GUITHDRAFT_164718 I
SPRG_05174 Saprolegnia parasitica SPRG_05174 I
maker-pir_contig_80-snap-gene-0.40 Pythium irregulare maker-pir_contig_80-snap-gene-0.40 I
maker-pve_contig_89-fgenesh-gene-0.16 Pythium vexans maker-pve_contig_89-fgenesh-gene-0.16 I
MYCFIDRAFT_30809 Pseudocercospora fijiensis MYCFIDRAFT_30809 I
Mycgr3G75916 Zymoseptoria tritici Mycgr3G75916 I
PBANKA_051740 Plasmodium berghei PBANKA_051740 I
PCHAS_051750 Plasmodium chabaudi PCHAS_051750 I
PF10_0327 Plasmodium falciparum PF10_0327 I
Phyra52118 Phytophthora ramorum Phyra52118 I
Physo127490 Phytophthora sojae Physo127490 I
PITG_01528 Phytophthora infestans PITG_01528 I
PKH_061800 Plasmodium knowlesi PKH_061800 I
PVX_111045 Plasmodium vivax PVX_111045 I
cdc5l Dictyostelium discoideum DDB_G0279311 N