CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

AMTR_s00010p00257890 *(Amborella trichopoda)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	AMTR_s00010p00257890	T343662_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.973	0.537
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.973	0.537
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.973	0.537
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.973	0.537
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.972	0.524
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.971	0.558
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.961	0.503
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.961	0.456
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.960	0.456
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.959	0.503
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.959	0.435
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.958	0.490
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.958	0.490
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.958	0.442
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.958	0.442
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.958	0.442
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.957	0.422
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.957	0.408
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.956	0.395
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.956	0.395
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.956	0.395
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.956	0.395
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.956	0.401
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.956	0.401
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.954	0.408
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.953	0.401
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.953	0.401
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.951	0.401
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.948	0.415
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.948	0.415
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.948	0.408
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.945	0.415
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.945	0.415
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.898	0.395
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.898	0.395
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ERM94431	TCP	71	240	ASNKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFSSLNISLRSSAASLAAPVLKSSYFHPSITQQLIARPEPWDHDPSRRLMLGSSIPNLSQQTATNSSHLGLSAQQLFSKPAFHDSDIDETDSKKRRADLSEQSSI

Links
Other TCP family TFs
Other *Amborella trichopoda* TFs

657 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
TRIATDRAFT_297925	Trichoderma atroviride	TRIATDRAFT_297925	N
MGG_08015	Magnaporthe oryzae	MGG_08015	N
MGU_07938	Metarhizium guizhouense	MGU_07938	N
MYCTH_71014	Myceliophthora thermophila	MYCTH_71014	N
NechaG101763	Fusarium solani	NechaG101763	N
NEUTE1DRAFT_147899	Neurospora tetrasperma	NEUTE1DRAFT_147899	N
PFICI_13633	Pestalotiopsis fici	PFICI_13633	N
S40285_07530	Stachybotrys chlorohalonata	S40285_07530	N
S40288_02304	Stachybotrys chartarum	S40288_02304	N
SAPIO_CDS1330	Scedosporium apiospermum	SAPIO_CDS1330	N
SMAC_06370	Sordaria macrospora	SMAC_06370	N
SPBR_03062	Sporothrix brasiliensis	SPBR_03062	N
THITE_2117609	Thielavia terrestris	THITE_2117609	N
MBR_08628	Metarhizium brunneum	MBR_08628	N
TRIREDRAFT_44290	Trichoderma reesei	TRIREDRAFT_44290	N
TRIVIDRAFT_71606	Trichoderma virens	TRIVIDRAFT_71606	N
UCREL1_9736	Eutypa lata	UCREL1_9736	N
UCRPA7_8290	Togninia minima	UCRPA7_8290	N
UV8b_6674	Ustilaginoidea virens	UV8b_6674	N
VHEMI09843	Torrubiella hemipterigena	VHEMI09843	N
X797_008201	Metarhizium robertsii	X797_008201	N
estExt_fgenesh1_pg.C_sca_43_chr10_1_00099	Nectria haematococca	estExt_fgenesh1_pg.C_sca_43_chr10_1_00099	N
estExt_fgenesh3_pm.C_80304	Neurospora discreta	estExt_fgenesh3_pm.C_80304	N
NCU06145	Neurospora crassa	NCU06145	N
e_gw1.4.698.1	Cryphonectria parasitica	e_gw1.4.698.1	N
FFUJ_03890	Fusarium fujikuroi	FFUJ_03890	N
BBA_00882	Beauveria bassiana	BBA_00882	N
CFIO01_11721	Colletotrichum fioriniae	CFIO01_11721	N
CGGC5_10881	Colletotrichum gloeosporioides	CGGC5_10881	N
CH063_01255	Colletotrichum higginsianum	CH063_01255	N
CHGG_09841	Chaetomium globosum	CHGG_09841	N
CMQ_1562	Grosmannia clavigera	CMQ_1562	N
Cob_07208	Colletotrichum orbiculare	Cob_07208	N
CPUR_07536	Claviceps purpurea	CPUR_07536	N
CSUB01_01314	Colletotrichum sublineola	CSUB01_01314	N
CTHT_0018200	Chaetomium thermophilum	CTHT_0018200	N
F503_07557	Ophiostoma piceae uamh	F503_07557	N
ACRE_061680	Acremonium chrysogenum	ACRE_061680	N
FGRRES_04889	Fusarium graminearum	FGRRES_04889	N
FOXG_05735	Fusarium oxysporum	FOXG_05735	N
FPSE_03992	Fusarium pseudograminearum	FPSE_03992	N
GGTG_03418	Gaeumannomyces graminis	GGTG_03418	N
GLRG_08580	Colletotrichum graminicola	GLRG_08580	N
HMPREF1624_02947	Sporothrix schenckii	HMPREF1624_02947	N
MAC_06595	Metarhizium acridum	MAC_06595	N
MAJ_09938	Metarhizium majus	MAJ_09938	N
MAM_07567	Metarhizium album	MAM_07567	N
MANI_002902	Metarhizium anisopliae	MANI_002902	N
MAPG_01366	Magnaporthe poae	MAPG_01366	N

AMTR_s00010p00257890 (Amborella trichopoda) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

657 Related TFs

AMTR_s00010p00257890 **(Amborella trichopoda)
TCP**