TCP13 (Arabidopsis thaliana)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AT3G02150 T343686_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP13
M07283_2.00		 Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a		 (Direct) (Direct)
TCP13
M07284_2.00		 Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.932 0.528
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.932 0.528
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.917 0.556
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.903 0.491
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.897 0.491
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.897 0.491
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.866 0.454
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.855 0.444
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.852 0.435
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.852 0.435
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.852 0.435
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.851 0.444
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.844 0.435
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.844 0.435
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G02150.1 TCP 72 233
AT3G02150.2 TCP 72 233

Links

Other TCP family TFs
Other Arabidopsis thaliana TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TIGD3 Oryctolagus cuniculus ENSOCUG00000026984 N
ENSP00000377805 Macaca fascicularis ENSP00000377805 N
ENSBTAP00000004005-D1 Bos grunniens ENSBTAP00000004005-D1 N
ENSVPAG00000009110 Vicugna pacos ENSVPAG00000009110 N
TIGD3 Tupaia belangeri ENSTBEG00000008871 N
ENSSTOG00000024637 Ictidomys tridecemlineatus ENSSTOG00000024637 N
TIGD3 Sus scrofa ENSSSCG00000012994 N
ENSSHAG00000003566 Sarcophilus harrisii ENSSHAG00000003566 N
TIGD3 Sorex araneus ENSSARG00000009391 N
Tigd3 Rattus norvegicus ENSRNOG00000023318 N
TIGD3 Pan troglodytes ENSPTRG00000003873 N
ENSPSIG00000001900 Pelodiscus sinensis ENSPSIG00000001900 N
ENSPPYG00000003068 Pongo abelii ENSPPYG00000003068 N
ENSPANG00000006957 Papio anubis ENSPANG00000006957 N
TIGD3 Otolemur garnettii ENSOGAG00000027212 N
TIGD3 Bos taurus ENSBTAG00000003079 N
Tigd3 Mus musculus ENSMUSG00000044390 N
ENSMPUG00000019988 Mustela putorius furo ENSMPUG00000019988 N
TIGD3 Macaca mulatta ENSMMUG00000019165 N
TIGD3 Myotis lucifugus ENSMLUG00000003893 N
TIGD3 Loxodonta africana ENSLAFG00000032647 N
ENSLACG00000012827 Latimeria chalumnae ENSLACG00000012827 N
TIGD3 Homo sapiens ENSG00000173825 N
TIGD3 Felis catus ENSFCAG00000025695 N
TIGD3 Equus caballus ENSECAG00000006896 N
TIGD3 Dasypus novemcinctus ENSDNOG00000004634 N
ENSCSAG00000019171 Chlorocebus sabaeus ENSCSAG00000019171 N
TIGD3 Cavia porcellus ENSCPOG00000009317 N
TIGD3 Callithrix jacchus ENSCJAG00000022193 N
TIGD3 Canis familiaris ENSCAFG00000013628 N