Bra038350 (Brassica rapa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bra038350 T343797_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.887 0.415
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.882 0.415
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.860 0.398
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra038350.1-P TCP 103 225

Links

Other TCP family TFs
Other Brassica rapa TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM10 Taeniopygia guttata ENSTGUG00000000530 N
ENSOARG00000014507 Ovis aries ENSOARG00000014507 N
PRDM10 Otolemur garnettii ENSOGAG00000010723 N
ENSPANG00000017470 Papio anubis ENSPANG00000017470 N
ENSPPYG00000004061 Pongo abelii ENSPPYG00000004061 N
ENSPSIG00000009207 Pelodiscus sinensis ENSPSIG00000009207 N
ENSPTRG00000004477 Pan troglodytes ENSPTRG00000004477 N
PRDM10 Pteropus vampyrus ENSPVAG00000012764 N
Prdm10 Rattus norvegicus ENSRNOG00000007853 N
ENSSHAG00000004503 Sarcophilus harrisii ENSSHAG00000004503 N
PRDM10 Sus scrofa ENSSSCG00000015243 N
ENSOANG00000000577 Ornithorhynchus anatinus ENSOANG00000000577 N
ENSTSYG00000000544 Tarsius syrichta ENSTSYG00000000544 N
PRDM10 Tursiops truncatus ENSTTRG00000009189 N
Aan_R007210 Calypte anna Aan_R007210 N
Afo_R001308 Aptenodytes forsteri Afo_R001308 N
Cmyd_10005399 Chelonia mydas Cmyd_10005399 N
ENSBTAP00000025295-D1 Bos grunniens ENSBTAP00000025295-D1 N
Gfo_R003002 Geospiza fortis Gfo_R003002 N
Ogr16136 Ophisaurus gracilis Ogr16136 N
Pvit_19202 Pogona vitticeps Pvit_19202 N
Tal_R010066 Tyto alba Tal_R010066 N
ENSFALG00000004873 Ficedula albicollis ENSFALG00000004873 N
ENSAMEG00000002425 Ailuropoda melanoleuca ENSAMEG00000002425 N
ENSAPLG00000004858 Anas platyrhynchos ENSAPLG00000004858 N
PRDM10 Bos taurus ENSBTAG00000019001 N
PRDM10 Canis familiaris ENSCAFG00000010164 N
PRDM10 Choloepus hoffmanni ENSCHOG00000002494 N
PRDM10 Callithrix jacchus ENSCJAG00000009235 N
ENSCSAG00000002202 Chlorocebus sabaeus ENSCSAG00000002202 N
PRDM10 Dasypus novemcinctus ENSDNOG00000001366 N
PRDM10 Equus caballus ENSECAG00000011499 N
PRDM10 Erinaceus europaeus ENSEEUG00000013526 N
PRDM10 Anolis carolinensis ENSACAG00000017654 N
PRDM10 Felis catus ENSFCAG00000004111 N
PRDM10 Homo sapiens ENSG00000170325 N
ENSGALG00000001278 Gallus gallus ENSGALG00000001278 N
PRDM10 Gorilla gorilla ENSGGOG00000015359 N
PRDM10 Meleagris gallopavo ENSMGAG00000001112 N
PRDM10 Myotis lucifugus ENSMLUG00000013051 N
PRDM10 Macaca mulatta ENSMMUG00000017555 N
PRDM10 Monodelphis domestica ENSMODG00000004979 N
ENSMPUG00000008711 Mustela putorius furo ENSMPUG00000008711 N
ENSNLEG00000007488 Nomascus leucogenys ENSNLEG00000007488 N