TCP17 (Arabidopsis lyrata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 fgenesh2_kg.6__773__AT5G08070.1 T343847_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.972 0.912
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.972 0.912
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.938 0.593
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.938 0.593
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.937 0.725
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.935 0.725
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.926 0.593
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.870 0.484
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.836 0.462
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__773__AT5G08070.1 TCP 31 212

Links

Other TCP family TFs
Other Arabidopsis lyrata TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_001160 Acremonium chrysogenum ACRE_001160 N
BBA_05984 Beauveria bassiana BBA_05984 N
ATEG_04740 Aspergillus terreus CADATEAG00006673 N
CANTEDRAFT_115107 Candida tenuis CANTEDRAFT_115107 N
DOTSEDRAFT_68527 Dothistroma septosporum DOTSEDRAFT_68527 N
HPODL_03398 Ogataea parapolymorpha HPODL_03398 N
J056_003946 Wallemia ichthyophaga J056_003946 N
M437DRAFT_10349 Aureobasidium melanogenum M437DRAFT_10349 N
M438DRAFT_346038 Aureobasidium pullulans M438DRAFT_346038 N
SMAC_08106 Sordaria macrospora SMAC_08106 N
UCREL1_4624 Eutypa lata UCREL1_4624 N
VDAG_09177 Verticillium dahliae VDAG_09177 N