CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MLOC_60577 *(Hordeum vulgare)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	MLOC_60577	T344023_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.943	0.598
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.941	0.538
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.964	0.578
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.964	0.578
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.941	0.538
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.940	0.564
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.963	0.563
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.958	0.444
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.928	0.479
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.928	0.479
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.927	0.513
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.949	0.430
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.919	0.376
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.946	0.444
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.919	0.376
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.946	0.444
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.945	0.422
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.945	0.430
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.916	0.350
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.945	0.407
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.945	0.407
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.945	0.407
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.943	0.452
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.916	0.368
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.943	0.422
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.916	0.359
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.942	0.452
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.942	0.444
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.941	0.437
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.941	0.437
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.941	0.437
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.912	0.393
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.940	0.459
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.881	0.436
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.881	0.436
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
MLOC_60577.1	TCP	1	159	MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSMLSTIPAHLRAAGLPGSRFGGGPRADAWDRFVGLGFGGGLESPASTTTSSSSPLLLSFHSGSVGLDVSPSSSAAAASTELSRKRRWEQEMQQQQQQHH
MLOC_60577.2	TCP	57	256	TTSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSMLSTIPAHLRAAGLPGSRFGGGPRADAWDRFVGLGFGGGLESPASTTTSSSSPLLLSFHSGSVGLDVSPSSSAAAASTELSRKRRWEQEMQQQQQQHHQHQQQQQQQYQQQMAGYTQSQMP
MLOC_60577.3	TCP	57	256	TTSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSMLSTIPAHLRAAGLPGSRFGGGPRADAWDRFVGLGFGGGLESPASTTTSSSSPLLLSFHSGSVGLDVSPSSSAAAASTELSRKRRWEQEMQQQQQQHHQHQQQQQQQYQQQMAGYTQSQMP

Links
Other TCP family TFs
Other *Hordeum vulgare* TFs

660 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ZBTB4	Otolemur garnettii	ENSOGAG00000034491	N
Myotis_brandtii_ZBTB4_10021044	Myotis brandtii	Myotis_brandtii_ZBTB4_10021044	N
ENSP00000307858	Macaca fascicularis	ENSP00000307858	N
ENSP00000307858-D1	Bos grunniens	ENSP00000307858-D1	N
ZBTB4	Tursiops truncatus	ENSTTRG00000014262	N
ENSSTOG00000000346	Ictidomys tridecemlineatus	ENSSTOG00000000346	N
ZBTB4	Sus scrofa	ENSSSCG00000026636	N
ENSSHAG00000003998	Sarcophilus harrisii	ENSSHAG00000003998	N
ZBTB4	Sorex araneus	ENSSARG00000005864	N
Zbtb4	Rattus norvegicus	ENSRNOG00000014689	N
ZBTB4	Pteropus vampyrus	ENSPVAG00000005068	N
ZBTB4	Pan troglodytes	ENSPTRG00000008690	N
ENSPPYG00000007922	Pongo abelii	ENSPPYG00000007922	N
ZBTB4	Procavia capensis	ENSPCAG00000006918	N
ENSPANG00000024098	Papio anubis	ENSPANG00000024098	N
ZBTB4	Ochotona princeps	ENSOPRG00000015082	N
ZBTB4	Bos taurus	ENSBTAG00000008289	N
ZBTB4	Oryctolagus cuniculus	ENSOCUG00000007437	N
ENSOARG00000013691	Ovis aries	ENSOARG00000013691	N
Zbtb4	Mus musculus	ENSMUSG00000018750	N
ENSMPUG00000009666	Mustela putorius furo	ENSMPUG00000009666	N
ENSMEUG00000008942	Macropus eugenii	ENSMEUG00000008942	N
ZBTB4	Loxodonta africana	ENSLAFG00000015214	N
ZBTB4	Gorilla gorilla	ENSGGOG00000016401	N
ZBTB4	Homo sapiens	ENSG00000174282	N
ZBTB4	Equus caballus	ENSECAG00000018353	N
ENSDORG00000008665	Dipodomys ordii	ENSDORG00000008665	N
ZBTB4	Dasypus novemcinctus	ENSDNOG00000034417	N
ENSCPOG00000014810	Cavia porcellus	ENSCPOG00000014810	N
ZBTB4	Callithrix jacchus	ENSCJAG00000000751	N
ZBTB4	Canis familiaris	ENSCAFG00000016341	N

MLOC_60577 (Hordeum vulgare) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

660 Related TFs

MLOC_60577 **(Hordeum vulgare)
TCP**