POPTR_0015s06980 (Populus trichocarpa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 POPTR_0015s06980 T344304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.953 0.543
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.953 0.543
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.936 0.500
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.924 0.509
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.924 0.509
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.898 0.466
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.898 0.466
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.873 0.379
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.862 0.379
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.846 0.379
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.844 0.388
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.844 0.388
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.844 0.388
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.841 0.371
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.835 0.379
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.835 0.371
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s06980.1 TCP 52 215

Links

Other TCP family TFs
Other Populus trichocarpa TFs

399 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VDBG_04249 Verticillium albo atrum VDBG_04249 I
SAKL0D14916g Lachancea kluyveri SAKL0D14916g I
VHEMI00428 Torrubiella hemipterigena VHEMI00428 I
VDBG_04249 Verticillium alfalfae VDBG_04249 I
VDAG_01478 Verticillium dahliae VDAG_01478 I
PODANS_4_2530 Podospora anserina PODANS_4_2530 I
MGG_08093 Magnaporthe oryzae MGG_08093 I
MAM_05054 Metarhizium album MAM_05054 I
HMPREF1120_05968 Exophiala dermatitidis HMPREF1120_05968 N
CLUG_05915 Candida lusitaniae CLUG_05915 N
estExt_fgenesh1_pg.C_150042 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_150042 N
YALI0_D06193g Yarrowia lipolytica YALI0_D06193g N
A1O3_04608 Capronia epimyces A1O3_04608 N
CaO19.13413 Candida albicans CaO19.13413 N
CaO19.5992 Candida albicans CaO19.5992 N
SPOG_00690 Schizosaccharomyces cryophilus SPOG_00690 N
SOCG_02136 Schizosaccharomyces octosporus SOCG_02136 N
CCM_08254 Cordyceps militaris CCM_08254 N
MGG_17623 Magnaporthe oryzae MGG_17623 N
CD36_85150 Candida dubliniensis CD36_85150 N
CFIO01_10586 Colletotrichum fioriniae CFIO01_10586 N
CH063_11092 Colletotrichum higginsianum CH063_11092 N
GLRG_03456 Colletotrichum graminicola GLRG_03456 N
G210_4588 Candida maltosa G210_4588 N
DOTSEDRAFT_68927 Dothistroma septosporum DOTSEDRAFT_68927 N
CTRG_03975 Candida tropicalis CTRG_03975 N
CTRG_02521 Candida tropicalis CTRG_02521 N
CSUB01_04728 Colletotrichum sublineola CSUB01_04728 N
COCVIDRAFT_106561 Bipolaris victoriae COCVIDRAFT_106561 N
COCSADRAFT_156072 Bipolaris sorokiniana COCSADRAFT_156072 N
COCMIDRAFT_97135 Bipolaris oryzae COCMIDRAFT_97135 N
COCCADRAFT_83759 Bipolaris zeicola COCCADRAFT_83759 N
CLUG_05915 Clavispora lusitaniae CLUG_05915 N
CH063_12034 Colletotrichum higginsianum CH063_12034 N