CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

cassava17538.valid.m1 *(Manihot esculenta)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	cassava17538.valid.m1	T344598_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.978	0.639
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.975	0.583
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.972	0.549
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.972	0.549
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.972	0.549
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.972	0.549
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.967	0.562
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.963	0.507
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.963	0.507
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.960	0.528
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.957	0.438
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.955	0.431
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.955	0.431
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.955	0.431
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.955	0.438
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.954	0.451
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.954	0.424
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.953	0.458
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.952	0.410
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.952	0.417
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.951	0.417
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.951	0.417
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.950	0.424
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.950	0.410
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.950	0.403
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.950	0.403
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.950	0.403
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.950	0.403
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.950	0.417
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.948	0.424
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.948	0.424
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.942	0.403
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.942	0.396
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.894	0.417
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.894	0.417
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
cassava17538.valid.m1	TCP	84	253	TSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSASFNPNFSMQQRRSLFPGLGLETSPTPTFLNFQSSNLNAMLQAKQELRDSSSLELSTETEESLSRKRRQEQELPSQQHQMG

Links
Other TCP family TFs
Other *Manihot esculenta* TFs

657 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
PVAR5_2222	Byssochlamys spectabilis	PVAR5_2222	N
PAAG_11207	Paracoccidioides sp lutzii	PAAG_11207	N
PABG_01676	Paracoccidioides brasiliensis	PABG_01676	N
PMAA_029710	Talaromyces marneffei	PMAA_029710	N
PV05_11133	Exophiala xenobiotica	PV05_11133	N
PV07_10166	Cladophialophora immunda	PV07_10166	N
PV08_06011	Exophiala spinifera	PV08_06011	N
PV10_07538	Exophiala mesophila	PV10_07538	N
PV11_08024	Exophiala sideris	PV11_08024	N
MGYG_02110	Microsporum gypseum	MGYG_02110	N
TEQG_02005	Trichophyton equinum	TEQG_02005	N
TRV_06300	Trichophyton verrucosum	TRV_06300	N
TSTA_068680	Talaromyces stipitatus	TSTA_068680	N
UREG_01015	Uncinocarpus reesii	UREG_01015	N
W97_06158	Coniosporium apollinis	W97_06158	N
Z517_08280	Fonsecaea pedrosoi	Z517_08280	N
Z518_04016	Rhinocladiella mackenziei	Z518_04016	N
Z519_03005	Cladophialophora bantiana	Z519_03005	N
EPUS_07706	Endocarpon pusillum	EPUS_07706	N
MCYG_04527	Microsporum canis	MCYG_04527	N
A1O1_00584	Capronia coronata	A1O1_00584	N
A1O5_03686	Cladophialophora psammophila	A1O5_03686	N
A1O7_00496	Cladophialophora yegresii	A1O7_00496	N
A1O9_04841	Exophiala aquamarina	A1O9_04841	N
ARB_04972	Arthroderma benhamiae	ARB_04972	N
BDDG_00723	Blastomyces dermatitidis	BDDG_00723	N
CPC735_052920	Coccidioides posadasii	CPC735_052920	N
CIMG_01069	Coccidioides immitis	CIMG_01069	N
G647_00537	Cladophialophora carrionii	G647_00537	N
H101_00145	Trichophyton interdigitale	H101_00145	N
H102_05631	Trichophyton rubrum	H102_05631	N
H105_05671	Trichophyton soudanense	H105_05671	N
HCBG_00932	Histoplasma capsulatum	HCBG_00932	N
HMPREF1120_06189	Exophiala dermatitidis	HMPREF1120_06189	N
MBM_04902	Marssonina brunnea	MBM_04902	N
MCYG_04527	Arthroderma otae	MCYG_04527	N

cassava17538.valid.m1 (Manihot esculenta) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

657 Related TFs

cassava17538.valid.m1 **(Manihot esculenta)
TCP**