Carubv10026656m.g (Capsella rubella)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Carubv10026656m.g T344770_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.980 0.876
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.975 0.752
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.940 0.496
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.928 0.545
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.928 0.545
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.901 0.446
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.901 0.446
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.880 0.388
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.868 0.372
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.854 0.364
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.849 0.355
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.849 0.355
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.844 0.355
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.843 0.380
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.843 0.380
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.843 0.380
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026656m TCP 61 227

Links

Other TCP family TFs
Other Capsella rubella TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
REB1 Saccharomyces cerevisiae YBR049C D
SKUD_123301 Saccharomyces kudriavzevii SKUD_123301 I
KLTH0C07788g Kluyveromyces thermotolerans KLTH0C07788g I
746_YFL003C Saccharomyces bayanus 746_YFL003C I
3333_Multiple Saccharomyces mikatae 3333_Multiple I
21379_Multiple Saccharomyces bayanus 21379_Multiple I
1177_YBR049C Saccharomyces paradoxus 1177_YBR049C I
Scas_Contig661.16 Saccharomyces castellii Scas_Contig661.16 I
TPHA_0M00950 Tetrapisispora phaffii TPHA_0M00950 I
TDEL_0D03690 Torulaspora delbrueckii TDEL_0D03690 I
SKUD_176006 Saccharomyces kudriavzevii SKUD_176006 I
AACERI_AaceriABL092W Saccharomycetaceae sp ashbya aceri AACERI_AaceriABL092W I
NDAI_0A06300 Naumovozyma dairenensis NDAI_0A06300 I
NDAI_0A05820 Naumovozyma dairenensis NDAI_0A05820 I
NCAS_0I01690 Naumovozyma castellii NCAS_0I01690 I
NCAS_0A10470 Naumovozyma castellii NCAS_0A10470 I
LALA0_S02e08900g Lachancea lanzarotensis LALA0_S02e08900g I
KNAG_0H01320 Kazachstania naganishii KNAG_0H01320 I
KLTH0C07788g Lachancea thermotolerans KLTH0C07788g I
KAFR_0E01200 Kazachstania africana KAFR_0E01200 I
Ecym_5138 Eremothecium cymbalariae Ecym_5138 I
AGOS_ABL092W Ashbya gossypii AGOS_ABL092W I