Ciclev10020626m.g (Citrus clementina)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Ciclev10020626m.g T344784_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.949 0.529
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.945 0.537
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.932 0.455
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.927 0.521
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.927 0.521
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.897 0.471
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.897 0.471
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.874 0.397
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.865 0.364
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.853 0.372
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.853 0.372
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.853 0.372
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.849 0.372
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.849 0.372
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.829 0.364
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.829 0.355
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10020626m TCP 62 227

Links

Other TCP family TFs
Other Citrus clementina TFs

408 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PTT_13781 Pyrenophora teres PTT_13781 I
gw1.6.911.1 Cryphonectria parasitica gw1.6.911.1 I
estExt_Genewise1Plus.C_270143 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_270143 I
W97_06511 Coniosporium apollinis W97_06511 I
VHEMI05022 Torrubiella hemipterigena VHEMI05022 I
TRIVIDRAFT_33222 Trichoderma virens TRIVIDRAFT_33222 I
TRIREDRAFT_108872 Trichoderma reesei TRIREDRAFT_108872 I
TRIATDRAFT_80549 Trichoderma atroviride TRIATDRAFT_80549 I
SNOG_00452 Phaeosphaeria nodorum SNOG_00452 I
SETTUDRAFT_134649 Setosphaeria turcica SETTUDRAFT_134649 I
SNOG_00452 Stagonospora nodorum SNOG_00452 I
PTRG_10320 Pyrenophora triticirepentis PTRG_10320 I
LEMA_P067560.1 Leptosphaeria maculans LEMA_P067560.1 I
COCVIDRAFT_97328 Bipolaris victoriae COCVIDRAFT_97328 I
COCSADRAFT_116952 Bipolaris sorokiniana COCSADRAFT_116952 I
COCMIDRAFT_36857 Bipolaris oryzae COCMIDRAFT_36857 I
COCCADRAFT_37638 Bipolaris zeicola COCCADRAFT_37638 I
COCC4DRAFT_53548 Bipolaris maydis COCC4DRAFT_53548 I
CCM_00085 Cordyceps militaris CCM_00085 I
BBA_01414 Beauveria bassiana BBA_01414 I
Mycgr3G65005 Zymoseptoria tritici Mycgr3G65005 N
MYCFIDRAFT_107517 Pseudocercospora fijiensis MYCFIDRAFT_107517 N
PV09_07689 Verruconis gallopava PV09_07689 N
SEPMUDRAFT_148394 Sphaerulina musiva SEPMUDRAFT_148394 N
DOTSEDRAFT_70728 Dothistroma septosporum DOTSEDRAFT_70728 N
estExt_Genewise1Plus.C_chr_10224 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_10224 N
gw1.52.1.1 Mycosphaerella fijiensis gw1.52.1.1 N