gene27171-v1.0-hybrid (Fragaria vesca)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 gene27171-v1.0-hybrid T344844_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.947 0.420
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.947 0.420
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.941 0.395
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.941 0.395
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.941 0.395
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.938 0.420
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.882 0.318
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.880 0.338
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.880 0.338
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.851 0.293
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.851 0.293
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.846 0.280
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.834 0.306
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.834 0.306
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna27171.1-v1.0-hybrid TCP 159 417

Links

Other TCP family TFs
Other Fragaria vesca TFs

396 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CERSUDRAFT_114532 Ceriporiopsis subvermispora CERSUDRAFT_114532 I 0.000
FOMPIDRAFT_1024907 Fomitopsis pinicola FOMPIDRAFT_1024907 I 0.000
SERLA73DRAFT_159962 Serpula lacrymans SERLA73DRAFT_159962 I 0.000
PLEOSDRAFT_158391 Pleurotus ostreatus PLEOSDRAFT_158391 I 0.000
JAAARDRAFT_136956 Jaapia argillacea JAAARDRAFT_136956 I 0.000
PISMIDRAFT_675317 Pisolithus microcarpus PISMIDRAFT_675317 I 0.000
PILCRDRAFT_51 Piloderma croceum PILCRDRAFT_51 I 0.000
M378DRAFT_197822 Amanita muscaria M378DRAFT_197822 I 0.000
M404DRAFT_130508 Pisolithus tinctorius M404DRAFT_130508 I 0.000
M413DRAFT_441943 Hebeloma cylindrosporum M413DRAFT_441943 I 0.000
PAXRUDRAFT_132889 Paxillus rubicundulus PAXRUDRAFT_132889 I 0.000
Moror_6819 Moniliophthora roreri Moror_6819 I 0.000
YALI0_B04510g Yarrowia lipolytica YALI0_B04510g N 0.000
AGABI2DRAFT_117758 Agaricus bisporus AGABI2DRAFT_117758 N 0.000
VHEMI03210 Torrubiella hemipterigena VHEMI03210 N 0.000
MAPG_00887 Magnaporthe poae MAPG_00887 N 0.000
LACBIDRAFT_313811 Laccaria bicolor LACBIDRAFT_313811 N 0.000
K443DRAFT_636731 Laccaria amethystina K443DRAFT_636731 N 0.000
HMPREF1541_05860 Cyphellophora europaea HMPREF1541_05860 N 0.000
GGTG_02947 Gaeumannomyces graminis GGTG_02947 N 0.000
CY34DRAFT_802475 Suillus luteus CY34DRAFT_802475 N 0.000
BBA_00517 Beauveria bassiana BBA_00517 N 0.000