Gorai.009G373000 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.009G373000 T344873_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.960 0.608
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.957 0.600
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.957 0.542
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.957 0.542
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.957 0.542
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.939 0.525
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.901 0.425
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.888 0.425
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.887 0.417
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.866 0.400
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.853 0.375
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.851 0.417
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.851 0.417
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.844 0.358
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G373000.1 TCP 36 244

Links

Other TCP family TFs
Other Gossypium raimondii TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TVAG_453000 Trichomonas vaginalis TVAG_453000 N 0.000
TVAG_534630 Trichomonas vaginalis TVAG_534630 N 0.000
TVAG_531390 Trichomonas vaginalis TVAG_531390 N 0.000
TVAG_517530 Trichomonas vaginalis TVAG_517530 N 0.000
TVAG_514650 Trichomonas vaginalis TVAG_514650 N 0.000
TVAG_507340 Trichomonas vaginalis TVAG_507340 N 0.000
TVAG_506740 Trichomonas vaginalis TVAG_506740 N 0.000
TVAG_486380 Trichomonas vaginalis TVAG_486380 N 0.000
TVAG_473020 Trichomonas vaginalis TVAG_473020 N 0.000
TVAG_471970 Trichomonas vaginalis TVAG_471970 N 0.000
TVAG_457930 Trichomonas vaginalis TVAG_457930 N 0.000
TVAG_539860 Trichomonas vaginalis TVAG_539860 N 0.000
TVAG_442490 Trichomonas vaginalis TVAG_442490 N 0.000
TVAG_440640 Trichomonas vaginalis TVAG_440640 N 0.000
TVAG_439560 Trichomonas vaginalis TVAG_439560 N 0.000
TVAG_427180 Trichomonas vaginalis TVAG_427180 N 0.000
TVAG_422330 Trichomonas vaginalis TVAG_422330 N 0.000
TVAG_415680 Trichomonas vaginalis TVAG_415680 N 0.000
TVAG_388950 Trichomonas vaginalis TVAG_388950 N 0.000
TVAG_376980 Trichomonas vaginalis TVAG_376980 N 0.000
TVAG_365130 Trichomonas vaginalis TVAG_365130 N 0.000
TVAG_359360 Trichomonas vaginalis TVAG_359360 N 0.000
TVAG_566860 Trichomonas vaginalis TVAG_566860 N 0.000
TVAG_603880 Trichomonas vaginalis TVAG_603880 N 0.000
TVAG_603130 Trichomonas vaginalis TVAG_603130 N 0.000
TVAG_584920 Trichomonas vaginalis TVAG_584920 N 0.000
TVAG_584820 Trichomonas vaginalis TVAG_584820 N 0.000
TVAG_582290 Trichomonas vaginalis TVAG_582290 N 0.000
TVAG_579950 Trichomonas vaginalis TVAG_579950 N 0.000
TVAG_574820 Trichomonas vaginalis TVAG_574820 N 0.000
TVAG_574310 Trichomonas vaginalis TVAG_574310 N 0.000
TVAG_572200 Trichomonas vaginalis TVAG_572200 N 0.000
TVAG_568350 Trichomonas vaginalis TVAG_568350 N 0.000
TVAG_357040 Trichomonas vaginalis TVAG_357040 N 0.000
TVAG_566130 Trichomonas vaginalis TVAG_566130 N 0.000
TVAG_562780 Trichomonas vaginalis TVAG_562780 N 0.000
TVAG_562210 Trichomonas vaginalis TVAG_562210 N 0.000
TVAG_553880 Trichomonas vaginalis TVAG_553880 N 0.000
TVAG_551700 Trichomonas vaginalis TVAG_551700 N 0.000
TVAG_550550 Trichomonas vaginalis TVAG_550550 N 0.000
TVAG_550050 Trichomonas vaginalis TVAG_550050 N 0.000
TVAG_546680 Trichomonas vaginalis TVAG_546680 N 0.000
TVAG_546620 Trichomonas vaginalis TVAG_546620 N 0.000
TVAG_546580 Trichomonas vaginalis TVAG_546580 N 0.000
TVAG_082490 Trichomonas vaginalis TVAG_082490 N 0.000
TVAG_193570 Trichomonas vaginalis TVAG_193570 N 0.000
TVAG_184700 Trichomonas vaginalis TVAG_184700 N 0.000
TVAG_176590 Trichomonas vaginalis TVAG_176590 N 0.000
TVAG_160450 Trichomonas vaginalis TVAG_160450 N 0.000
TVAG_143010 Trichomonas vaginalis TVAG_143010 N 0.000
TVAG_132770 Trichomonas vaginalis TVAG_132770 N 0.000
TVAG_125900 Trichomonas vaginalis TVAG_125900 N 0.000
TVAG_115140 Trichomonas vaginalis TVAG_115140 N 0.000
TVAG_085170 Trichomonas vaginalis TVAG_085170 N 0.000
TVAG_084000 Trichomonas vaginalis TVAG_084000 N 0.000
TVAG_194490 Trichomonas vaginalis TVAG_194490 N 0.000
TVAG_072810 Trichomonas vaginalis TVAG_072810 N 0.000
TVAG_066150 Trichomonas vaginalis TVAG_066150 N 0.000
TVAG_055380 Trichomonas vaginalis TVAG_055380 N 0.000
TVAG_051900 Trichomonas vaginalis TVAG_051900 N 0.000
TVAG_032260 Trichomonas vaginalis TVAG_032260 N 0.000
TVAG_031630 Trichomonas vaginalis TVAG_031630 N 0.000
TVAG_029800 Trichomonas vaginalis TVAG_029800 N 0.000
TVAG_022050 Trichomonas vaginalis TVAG_022050 N 0.000
TVAG_019620 Trichomonas vaginalis TVAG_019620 N 0.000
TVAG_003790 Trichomonas vaginalis TVAG_003790 N 0.000
TVAG_274450 Trichomonas vaginalis TVAG_274450 N 0.000
TVAG_353570 Trichomonas vaginalis TVAG_353570 N 0.000
TVAG_347580 Trichomonas vaginalis TVAG_347580 N 0.000
TVAG_345950 Trichomonas vaginalis TVAG_345950 N 0.000
TVAG_341960 Trichomonas vaginalis TVAG_341960 N 0.000
TVAG_314210 Trichomonas vaginalis TVAG_314210 N 0.000
TVAG_298740 Trichomonas vaginalis TVAG_298740 N 0.000
TVAG_296430 Trichomonas vaginalis TVAG_296430 N 0.000
TVAG_290290 Trichomonas vaginalis TVAG_290290 N 0.000
TVAG_287170 Trichomonas vaginalis TVAG_287170 N 0.000
TVAG_282400 Trichomonas vaginalis TVAG_282400 N 0.000
TVAG_001730 Trichomonas vaginalis TVAG_001730 N 0.000
TVAG_270150 Trichomonas vaginalis TVAG_270150 N 0.000
TVAG_244290 Trichomonas vaginalis TVAG_244290 N 0.000
TVAG_232930 Trichomonas vaginalis TVAG_232930 N 0.000
TVAG_225500 Trichomonas vaginalis TVAG_225500 N 0.000
TVAG_222670 Trichomonas vaginalis TVAG_222670 N 0.000
TVAG_218470 Trichomonas vaginalis TVAG_218470 N 0.000
TVAG_217190 Trichomonas vaginalis TVAG_217190 N 0.000
TVAG_208350 Trichomonas vaginalis TVAG_208350 N 0.000
TVAG_207030 Trichomonas vaginalis TVAG_207030 N 0.000
TVAG_204520 Trichomonas vaginalis TVAG_204520 N 0.000