Gorai.011G046000 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.011G046000 T344875_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.949 0.587
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.941 0.542
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.941 0.542
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.901 0.374
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.896 0.323
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.896 0.323
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.896 0.323
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.890 0.323
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.890 0.323
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.889 0.323
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.889 0.323
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.883 0.310
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.879 0.316
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.878 0.355
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.868 0.310
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.868 0.310
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G046000.1 TCP 83 237
Gorai.011G046000.2 TCP 83 237

Links

Other TCP family TFs
Other Gossypium raimondii TFs

446 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATOH7 Homo sapiens ENSG00000179774 D
ENSXMAG00000019829 Xiphophorus maculatus ENSXMAG00000019829 I
atoh7 Oryzias latipes ENSORLG00000013722 I
ENSPANG00000008840 Papio anubis ENSPANG00000008840 I
ENSPFOG00000020278 Poecilia formosa ENSPFOG00000020278 I
ENSPSIG00000000814 Pelodiscus sinensis ENSPSIG00000000814 I
ATOH7 Pan troglodytes ENSPTRG00000002551 I
ATOH7 Pteropus vampyrus ENSPVAG00000008035 I
Atoh7 Rattus norvegicus ENSRNOG00000000384 I
ATOH7 Sus scrofa ENSSSCG00000021995 I
ENSSTOG00000023613 Ictidomys tridecemlineatus ENSSTOG00000023613 I
ATOH7 Taeniopygia guttata ENSTGUG00000003584 I
atoh7 Tetraodon nigroviridis ENSTNIG00000013093 I
atoh7 Takifugu rubripes ENSTRUG00000017954 I
ATOH7 Tursiops truncatus ENSTTRG00000013318 I
ATOH7 Vicugna pacos ENSVPAG00000011811 I
ATOH7 Otolemur garnettii ENSOGAG00000000980 I
Aan_R007727 Calypte anna Aan_R007727 I
Afo_R009492 Aptenodytes forsteri Afo_R009492 I
Alligator_sinensis_CCG007004.1 Alligator sinensis Alligator_sinensis_CCG007004.1 I
Brh_R011172 Buceros rhinoceros Brh_R011172 I
Cmyd_10012128 Chelonia mydas Cmyd_10012128 I
ENSP00000362777 Macaca fascicularis ENSP00000362777 I
Gfo_R013988 Geospiza fortis Gfo_R013988 I
Ogr07245 Ophisaurus gracilis Ogr07245 I
Pvit_00553 Pogona vitticeps Pvit_00553 I
Tal_R012797 Tyto alba Tal_R012797 I
atoh7.S Xenopus laevis XB-GENE-6252646 I
atoh7 Xenopus tropicalis XB-GENE-989022 I
atoh7.L Xenopus laevis XB-GENE-989023 I
ATOH7 Gallus gallus ENSGALG00000003931 I
ENSAMEG00000019067 Ailuropoda melanoleuca ENSAMEG00000019067 I
ENSAMXG00000025967 Astyanax mexicanus ENSAMXG00000025967 I
ENSAPLG00000000737 Anas platyrhynchos ENSAPLG00000000737 I
ATOH7 Bos taurus ENSBTAG00000017521 I
ATOH7 Canis familiaris ENSCAFG00000013555 I
ATOH7 Choloepus hoffmanni ENSCHOG00000013736 I
ATOH7 Callithrix jacchus ENSCJAG00000022261 I
ENSCSAG00000018432 Chlorocebus sabaeus ENSCSAG00000018432 I
atoh7 Danio rerio ENSDARG00000069552 I
ATOH7 Dasypus novemcinctus ENSDNOG00000048556 I
ATOH7 Echinops telfairi ENSETEG00000014608 I
ENSFALG00000014082 Ficedula albicollis ENSFALG00000014082 I
ATOH7 Felis catus ENSFCAG00000003425 I
atoh7 Gasterosteus aculeatus ENSGACG00000003390 I
ENSONIG00000010284 Oreochromis niloticus ENSONIG00000010284 I
ATOH7 Gorilla gorilla ENSGGOG00000016464 I
ENSLACG00000017485 Latimeria chalumnae ENSLACG00000017485 I
ATOH7 Loxodonta africana ENSLAFG00000012951 I
ENSLOCG00000018251 Lepisosteus oculatus ENSLOCG00000018251 I
ATOH7 Meleagris gallopavo ENSMGAG00000015321 I
ATOH7 Macaca mulatta ENSMMUG00000015131 I
ATOH7 Monodelphis domestica ENSMODG00000017280 I
ENSMPUG00000018542 Mustela putorius furo ENSMPUG00000018542 I
Atoh7 Mus musculus ENSMUSG00000036816 I
ENSNLEG00000018622 Nomascus leucogenys ENSNLEG00000018622 I
ATOH7 Ornithorhynchus anatinus ENSOANG00000001952 I
ENSOARG00000004935 Ovis aries ENSOARG00000004935 I
ATOH7 Anolis carolinensis ENSACAG00000010441 I