Thhalv10021021m.g (Eutrema salsugineum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Thhalv10021021m.g T345094_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.948 0.605
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.948 0.605
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.925 0.509
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.909 0.474
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.905 0.491
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.897 0.456
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.892 0.439
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.892 0.439
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.878 0.439
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.877 0.447
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.877 0.447
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.877 0.447
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.871 0.412
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.870 0.404
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.865 0.439
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.865 0.439
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10021021m TCP 94 255
Thhalv10021038m TCP 90 251

Links

Other TCP family TFs
Other Eutrema salsugineum TFs

433 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POU2F1 Homo sapiens ENSG00000143190 D
POU2F1 Microcebus murinus ENSMICG00000011644 I
pou2f1.S Xenopus laevis XB-GENE-853997 I
pou2f1 Xenopus tropicalis XB-GENE-853992 I
ENSP00000356836 Macaca fascicularis ENSP00000356836 I
ENSP00000356836-D1 Bos grunniens ENSP00000356836-D1 I
POU2F1 Vicugna pacos ENSVPAG00000000081 I
POU2F1 Tupaia belangeri ENSTBEG00000003121 I
POU2F1 Sus scrofa ENSSSCG00000006310 I
POU2F1 Pan troglodytes ENSPTRG00000001633 I
ENSPSIG00000009591 Pelodiscus sinensis ENSPSIG00000009591 I
ENSPPYG00000000552 Pongo abelii ENSPPYG00000000552 I
ENSONIG00000014184 Oreochromis niloticus ENSONIG00000014184 I
ENSOARG00000012010 Ovis aries ENSOARG00000012010 I
ENSNLEG00000014790 Nomascus leucogenys ENSNLEG00000014790 I
POU2F1 Monodelphis domestica ENSMODG00000002572 I
POU2F1 Macaca mulatta ENSMMUG00000008155 I
POU2F1 Anolis carolinensis ENSACAG00000009565 I
POU2F1 Meleagris gallopavo ENSMGAG00000014434 I
ENSLOCG00000009711 Lepisosteus oculatus ENSLOCG00000009711 I
POU2F1 Loxodonta africana ENSLAFG00000018204 I
POU2F1 Gorilla gorilla ENSGGOG00000016243 I
POU2F1 Gallus gallus ENSGALG00000015446 I
POU2F1 Echinops telfairi ENSETEG00000017919 I
POU2F1 Equus caballus ENSECAG00000009395 I
POU2F1 Dasypus novemcinctus ENSDNOG00000004060 I
pou2f1b Danio rerio ENSDARG00000007996 I
ENSCSAG00000010919 Chlorocebus sabaeus ENSCSAG00000010919 I
POU2F1 Callithrix jacchus ENSCJAG00000017095 I
POU2F1 Choloepus hoffmanni ENSCHOG00000004638 I
ENSAPLG00000005929 Anas platyrhynchos ENSAPLG00000005929 I