CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

chr3.CM0282.560.nc *(Lotus japonicus)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	chr3.CM0282.560.nc	T345118_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP24 M02499_2.00	Arabidopsis thaliana	NNNNRVMCVV	BBGKBYNNNN	PBM Weirauch et al.(2014) pTH7337	0.945	0.254
TCP24 M07272_2.00	Arabidopsis thaliana	GTGGGGACCAC	GTGGTCCCCAC	Dap-seq OMalley et al.(2016) TCP24_colamp_a	0.945	0.254
TCP24 M07273_2.00	Arabidopsis thaliana	NNBGGGACCACH	DGTGGTCCCVNN	Dap-seq OMalley et al.(2016) TCP24_col	0.945	0.254
TCP24 M02506_2.00	Arabidopsis lyrata	NBKKNNMMVN	NBKKNNMMVN	PBM Weirauch et al.(2014) pTH9227	0.941	0.243
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
chr3.CM0282.560.nc	TCP	48	199	TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELPAWNPTTAGTSSSQPPQNQQQQNFSEMLHRHSPVDDPVIASGSRMVTGRIPEQQFHSQQQLGNEDDEGGNNHNNTATKYKYTATAGSG
chr3.CM0282.560.nc	TCP	223	341	TTSFHSYPPPPDLLSRTASGGGSSQQDLRLSLQSFQDHHPIMFNHHHHQGHHEPVLFAGTPALSFDGGSSGGWPEQQQQQQNHHHQNHQQQQQQEEHEHGRLHRMVAWNVEAAEAANSG

Links
Other TCP family TFs
Other *Lotus japonicus* TFs