CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CRE10288 *(Caenorhabditis remanei)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	CRE10288	T345260_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.787
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.787
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.773
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.760
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.760
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.760
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.747
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.733
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.627
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.613
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.613
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.613
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.613
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.613
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.600
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.587
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.560
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.560
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.547
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.547
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.547
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.547
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.547
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.547
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.533
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.533
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.520
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.507
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CRE10288	TCR/CxC	172	208	RKPCNCTKSQCLKLYCDCFANGEFCRDCNCKDCHNNI
CRE10288	TCR/CxC	248	285	QKGCHCKKSGCLKNYCECYEAKVPCTDRCKCKCCQNTE

Links
Other TCR/CxC family TFs
Other *Caenorhabditis remanei* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Zfp1	Mus musculus	ENSMUSG00000055835	D
ZFP1	Homo sapiens	ENSG00000184517	D
ZFP1	Pan troglodytes	ENSPTRG00000008354	I
ENSOARG00000006461	Ovis aries	ENSOARG00000006461	I
ZFP1	Oryctolagus cuniculus	ENSOCUG00000001924	I
ZFP1	Otolemur garnettii	ENSOGAG00000001902	I
ZFP1	Ochotona princeps	ENSOPRG00000006123	I
ENSPANG00000016568	Papio anubis	ENSPANG00000016568	I
ZFP1	Procavia capensis	ENSPCAG00000007561	I
ENSPPYG00000007556	Pongo abelii	ENSPPYG00000007556	I
Myotis_brandtii_ZFP1_10035453	Myotis brandtii	Myotis_brandtii_ZFP1_10035453	I
Zfp1	Rattus norvegicus	ENSRNOG00000019059	I
ZFP1	Sorex araneus	ENSSARG00000013922	I
ZFP1	Sus scrofa	ENSSSCG00000022668	I
ENSSTOG00000022317	Ictidomys tridecemlineatus	ENSSTOG00000022317	I
ZFP1	Tupaia belangeri	ENSTBEG00000011217	I
ZFP1	Tursiops truncatus	ENSTTRG00000008949	I
ZFP1	Vicugna pacos	ENSVPAG00000012526	I
ENSP00000377080	Macaca fascicularis	ENSP00000377080	I
ENSAMEG00000001261	Ailuropoda melanoleuca	ENSAMEG00000001261	I
Zfp1	Dipodomys ordii	ENSDORG00000011934	I
ZFP1	Bos taurus	ENSBTAG00000000868	I
ZFP1	Canis familiaris	ENSCAFG00000020085	I
ZFP1	Choloepus hoffmanni	ENSCHOG00000003880	I
ZFP1	Callithrix jacchus	ENSCJAG00000014349	I
ZFP1	Cavia porcellus	ENSCPOG00000000634	I
ENSCSAG00000003718	Chlorocebus sabaeus	ENSCSAG00000003718	I
ENSDNOG00000006405	Dasypus novemcinctus	ENSDNOG00000006405	I
ENSDNOG00000010525	Dasypus novemcinctus	ENSDNOG00000010525	I
ENSNLEG00000013001	Nomascus leucogenys	ENSNLEG00000013001	I
ZFP1	Felis catus	ENSFCAG00000024047	I
ZFP1	Gorilla gorilla	ENSGGOG00000006121	I
ZFP1	Loxodonta africana	ENSLAFG00000003125	I
ZFP1	Microcebus murinus	ENSMICG00000015124	I
ZFP1	Myotis lucifugus	ENSMLUG00000002042	I
ZFP1	Macaca mulatta	ENSMMUG00000011587	I
ENSMPUG00000009946	Mustela putorius furo	ENSMPUG00000009946	I

CRE10288 (Caenorhabditis remanei) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

CRE10288 **(Caenorhabditis remanei)
TCR/CxC**