CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

prkrirb *(Oryzias latipes)* THAP finger
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF05485 (THAP)	IPR006612	ENSORLG00000005427	T348586_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
prkrirb M02540_2.00	Oryzias latipes	NNBBCCGGNHN	NDNCCGGVVNN	PBM Weirauch et al.(2014) pTH9383	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
prkrirb M02541_2.00	Tetraodon nigroviridis	CCCGCGGG	CCCGCGGG	PBM Weirauch et al.(2014) pTH8574	0.975	0.975
prkrirb M02536_2.00	Danio rerio	NNMCMGMSGGNN	NNCCSKCKGKNN	PBM Weirauch et al.(2014) pTH8319	0.924	0.924
THAP12 M02538_2.00	Homo sapiens	NNNYMBNNBGRN	NYCVNNVKRNNN	PBM Weirauch et al.(2014) pTH9190	0.848	0.848
THAP12 M02539_2.00	Gallus gallus	NBNYCKGKMNNN	NNNKMCMGRNVN	PBM Weirauch et al.(2014) pTH8688	0.810	0.810
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M02540_2.00	THAP finger	4	88	FCAAPNCTRKSTQSDLAFFRFPRDPERCRIWVENCRRADLEAKTADQLNKHYRLCAKHFDPAMVCKTSPYRTVLKDTAIPTIFDL

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSORLP00000006835	THAP finger	4	88	FCAAPNCTRKSTQSDLAFFRFPRDPERCRIWVENCRRADLEAKTADQLNKHYRLCAKHFDPAMVCKTSPYRTVLKDTAIPTIFDL

Links
Other THAP finger family TFs
Other *Oryzias latipes* TFs