Pavir.Ea01595 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Ea01595 T356726_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY6
M07377_2.00 		Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG
CGTTGACYNDNDHNDNNNH		 Dap-seq
OMalley et al.(2016)
WRKY6_col_a 		0.863 0.797
WRKY6
M07378_2.00 		Arabidopsis thaliana
NNHNWRGTCAACKNH
DNMGTTGACYWNDNN		 Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a 		0.863 0.797
WRKY31
M07408_2.00 		Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG
CGTTGACYHNNNNNDNNNN		 Dap-seq
OMalley et al.(2016)
WRKY31_col_a 		0.862 0.797
WRKY31
M07409_2.00 		Arabidopsis thaliana
NHWRGTCAACKNH
DNMGTTGACYWDN		 Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a 		0.862 0.797
WRKY42
M07404_2.00 		Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN
NNDNNHNNNNHGTTGACYWHN		 Dap-seq
OMalley et al.(2016)
WRKY42_col_a 		0.859 0.780
WRKY42
M07405_2.00 		Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD
HHNDNMGTTGACYWNNNHND		 Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a 		0.859 0.780
WRKY47
M00732_2.00 		Arabidopsis thaliana
NNRGTCAACKN
NMGTTGACYNN		 PBM
Chang et al.(2013)
pTH7913 		0.858 0.797
WRKY47
M07402_2.00 		Arabidopsis thaliana
WRGTCAAMGNHVDK
MHBDNCKTTGACYW		 Dap-seq
OMalley et al.(2016)
WRKY47_col_a 		0.858 0.797
WRKY47
M07403_2.00 		Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN
NNNNDNMGTTGACYWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a 		0.858 0.797
WRKY40
M02548_2.00 		Arabidopsis thaliana
NRGTCAWN
NWTGACYN		 PBM
Weirauch et al.(2014)
pTH8398 		0.818 0.661
WRKY40
M07379_2.00 		Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN		 Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a 		0.818 0.661
WRKY40
M07380_2.00 		Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY40_col 		0.818 0.661
WRKY40
M08180_2.00 		Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN		 ChIP-seq
Mathelier et al.(2014)
MA1085.2 		0.818 0.661
WRKY18
M02560_2.00 		Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7360 		0.808 0.678
WRKY18
M00900_2.00 		Arabidopsis thaliana
NVGTCNN
NNGACBN		 PBM
Franco-Zorrilla et al.(2014)
WRKY18 		0.808 0.678
WRKY18
M07416_2.00 		Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN		 Dap-seq
OMalley et al.(2016)
WRKY18_col_a 		0.808 0.678
WRKY18
M07417_2.00 		Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a 		0.808 0.678
WRKY18
M11465_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY18_Q2 		0.808 0.678
WRKY60
M02551_2.00 		Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN		 PBM
Weirauch et al.(2014)
pTH7379 		0.808 0.627
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea01595.1.p WRKY 145 203

Links

Other WRKY family TFs
Other Panicum virgatum TFs

758 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY18 Arabidopsis thaliana AT4G31800 D 0.808
WRKY60 Arabidopsis thaliana AT2G25000 D 0.808
Cagra.3807s0050 Capsella grandiflora Cagra.3807s0050 I 0.808
Eucgr.I01633 Eucalyptus grandis Eucgr.I01633 I 0.811
Bostr.7867s1032 Boechera stricta Bostr.7867s1032 I 0.808
Bostr.6758s0015 Boechera stricta Bostr.6758s0015 I 0.809
mgf019151m Mimulus guttatus mgf019151m I 0.808
mgf010377m Mimulus guttatus mgf010377m I 0.808
mgf006734m Mimulus guttatus mgf006734m I 0.812
Cucsa.271570 Cucumis sativus Cucsa.271570 I 0.810
Cucsa.204920 Cucumis sativus Cucsa.204920 I 0.810
Cla021335 Citrullus lanatus Cla021335 I 0.810
Cla015398 Citrullus lanatus Cla015398 I 0.810
WRKY23 Vitis vinifera VIT_07s0005g01710 I 0.810
VIT_04s0008g05760 Vitis vinifera VIT_04s0008g05760 I 0.809
TRIUR3_16803 Triticum urartu TRIUR3_16803 I 0.814
TRIUR3_16802 Triticum urartu TRIUR3_16802 I 0.814
Traes_5DL_32D78D06A Triticum aestivum Traes_5DL_32D78D06A I 0.814
Traes_5BL_90757F0CC Triticum aestivum Traes_5BL_90757F0CC I 0.814
TCM_036913 Theobroma cacao TCM_036913 I 0.809
MDP0000263349 Malus domestica MDP0000263349 I 0.811
PDK_20s1541671g001 Phoenix dactylifera PDK_20s1541671g001 I 0.808
LjSGA_069579.1 Lotus japonicus LjSGA_069579.1 I 0.809
PK20163.1 Cannabis sativa PK20163.1 I 0.808
Thhalv10025785m.g Eutrema salsugineum Thhalv10025785m.g I 0.808
Pavir.Bb02124 Panicum virgatum Pavir.Bb02124 I 0.808
Pavir.Bb02115 Panicum virgatum Pavir.Bb02115 I 0.809
Pavir.Ba01850 Panicum virgatum Pavir.Ba01850 I 0.808
MDP0000757476 Malus domestica MDP0000757476 I 0.812
Carubv10005349m.g Capsella rubella Carubv10005349m.g I 0.808
Lus10030040.g Linum usitatissimum Lus10030040.g I 0.809
Gorai.009G062300 Gossypium raimondii Gorai.009G062300 I 0.809
Gorai.008G137900 Gossypium raimondii Gorai.008G137900 I 0.812
Gorai.007G121200 Gossypium raimondii Gorai.007G121200 I 0.810
Gorai.001G037700 Gossypium raimondii Gorai.001G037700 I 0.813
evm.TU.supercontig_127.27 Carica papaya evm.TU.supercontig_127.27 I 0.812
Solyc03g116890.2 Solanum lycopersicum Solyc03g116890.2 I 0.809
Solyc12g042590.1 Solanum lycopersicum Solyc12g042590.1 I 0.810
AC193630.3_FG003 Zea mays AC193630.3_FG003 I 0.809
AMTR_s00065p00201230 Amborella trichopoda AMTR_s00065p00201230 I 0.809
Bo1g010960 Brassica oleracea Bo1g010960 I 0.808
Bo3g173640 Brassica oleracea Bo3g173640 I 0.808
Bo7g115410 Brassica oleracea Bo7g115410 I 0.808
Bra010220 Brassica rapa Bra010220 I 0.808
Bra011299 Brassica rapa Bra011299 I 0.808
Bra019123 Brassica rapa Bra019123 I 0.808
Bra023983 Brassica rapa Bra023983 I 0.808
BRADI4G30360 Brachypodium distachyon BRADI4G30360 I 0.811
fgenesh1_pm.C_scaffold_7000774 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000774 I 0.808
WRKY60 Arabidopsis lyrata fgenesh2_kg.4__412__AT2G25000.1 I 0.808
GLYMA04G06495 Glycine max GLYMA04G06495 I 0.808
GLYMA14G11960 Glycine max GLYMA14G11960 I 0.809
Solyc01g079260.2 Solanum lycopersicum Solyc01g079260.2 I 0.809
Si030794m.g Setaria italica Si030794m.g I 0.808
PGSC0003DMG401010558 Solanum tuberosum PGSC0003DMG401010558 I 0.808
PGSC0003DMG400009051 Solanum tuberosum PGSC0003DMG400009051 I 0.809
OLONG_008759 Oryza longistaminata OLONG_008759 I 0.808
LPERR09G07240 Leersia perrieri LPERR09G07240 I 0.808
GSMUA_Achr7G19340_001 Musa acuminata GSMUA_Achr7G19340_001 I 0.813
GSMUA_Achr7G00580_001 Musa acuminata GSMUA_Achr7G00580_001 I 0.808
GSMUA_Achr4G01930_001 Musa acuminata GSMUA_Achr4G01930_001 I 0.813
GSMUA_Achr3G13440_001 Musa acuminata GSMUA_Achr3G13440_001 I 0.809
GLYMA15G00570 Glycine max GLYMA15G00570 I 0.810
GLYMA06G06530 Glycine max GLYMA06G06530 I 0.808
BRADI4G37917 Brachypodium distachyon BRADI4G37917 N
MLOC_71830 Hordeum vulgare MLOC_71830 N
Traes_5AL_A72B96437 Triticum aestivum Traes_5AL_A72B96437 N
Traes_5BL_DCE703499 Triticum aestivum Traes_5BL_DCE703499 N
Traes_5DL_4E9E5C873 Triticum aestivum Traes_5DL_4E9E5C873 N
TRIUR3_21194 Triticum urartu TRIUR3_21194 N
Pavir.J39757 Panicum virgatum Pavir.J39757 N
orange1.1g045987m.g Citrus sinensis orange1.1g045987m.g N 0.810
BGIOSGA031259 Oryza indica BGIOSGA031259 N