CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VDBG_08085
(
Verticillium albo atrum
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
VDBG_08085
T358043_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
aod-5
M02602_2.00
Neurospora crassa
NNCGGRDNNN
NNNHYCCGNN
PBM
Weirauch et al.(2014)
pTH8816
0.683
0.974
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_08085T0
Zinc cluster
68
108
RACYACQRAHLTCGDERPCQRCIKRGLADACQDGVRKKAKY
Links
Other
Zinc cluster
family TFs
Other
Verticillium albo atrum
TFs
100 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
FIBRA_03825
Fibroporia radiculosa
FIBRA_03825
N
0.000
GLOTRDRAFT_113860
Gloeophyllum trabeum
GLOTRDRAFT_113860
N
0.000
HETIRDRAFT_312828
Heterobasidion irregulare
HETIRDRAFT_312828
N
0.000
PAXINDRAFT_94296
Paxillus involutus
PAXINDRAFT_94296
N
0.000
PILCRDRAFT_811594
Piloderma croceum
PILCRDRAFT_811594
N
0.000
e_gw1.4.1371.1
Heterobasidion annosum
e_gw1.4.1371.1
N
0.000