PVAR5_6400 (Byssochlamys spectabilis)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 PVAR5_6400 T382553_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANIA_00568
M01347_2.00 		Aspergillus nidulans
NRDWBSCCGV
BCGGSVWHYN		 PBM
Lambert et al.(2019)
pEX0204 		0.576 0.744
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GAD97720 Zinc cluster 23 61

Links

Other Zinc cluster family TFs
Other Byssochlamys spectabilis TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0007_76 Arabidopsis lyrata Al_scaffold_0007_76 I
AT4G38900 Arabidopsis thaliana AT4G38900 I
BGIOSGA029105 Oryza indica BGIOSGA029105 I
BGIOSGA029106 Oryza indica BGIOSGA029106 I
Bo3g149620 Brassica oleracea Bo3g149620 I
Bo5g007170 Brassica oleracea Bo5g007170 I
Bo7g119550 Brassica oleracea Bo7g119550 I
Bra010722 Brassica rapa Bra010722 I
Bra015471 Brassica rapa Bra015471 I
Bra030637 Brassica rapa Bra030637 I
Bra033582 Brassica rapa Bra033582 I
BRADI3G41980 Brachypodium distachyon BRADI3G41980 I
BRADI5G14497 Brachypodium distachyon BRADI5G14497 I
F775_32059 Aegilops tauschii F775_32059 I
GLYMA04G02850 Glycine max GLYMA04G02850 I
GLYMA11G11791 Glycine max GLYMA11G11791 I
GLYMA12G04050 Glycine max GLYMA12G04050 I
GSMUA_Achr11G14990_001 Musa acuminata GSMUA_Achr11G14990_001 I
GSMUA_Achr3G12290_001 Musa acuminata GSMUA_Achr3G12290_001 I
GSMUA_Achr5G25700_001 Musa acuminata GSMUA_Achr5G25700_001 I
GSMUA_Achr8G12090_001 Musa acuminata GSMUA_Achr8G12090_001 I
GSMUA_AchrUn_randomG00680_001 Musa acuminata GSMUA_AchrUn_randomG00680_001 I
MLOC_64362 Hordeum vulgare MLOC_64362 I
MLOC_64781 Hordeum vulgare MLOC_64781 I
MLOC_75510 Hordeum vulgare MLOC_75510 I
MTR_4g072090 Medicago truncatula MTR_4g072090 I
OB09G23080 Oryza brachyantha OB09G23080 I
OGLUM09G17020 Oryza glumaepatula OGLUM09G17020 I
OMERI09G12160 Oryza meridionalis OMERI09G12160 I
RF2A Oryza sativa OS09G0516200 I
PGSC0003DMG400001659 Solanum tuberosum PGSC0003DMG400001659 I
POPTR_0004s17080 Populus trichocarpa POPTR_0004s17080 I
POPTR_0009s12830 Populus trichocarpa POPTR_0009s12830 I
Sb06g021350 Sorghum bicolor Sb06g021350 I
SELMODRAFT_129846 Selaginella moellendorffii SELMODRAFT_129846 I
SELMODRAFT_34663 Selaginella moellendorffii SELMODRAFT_34663 I
SELMODRAFT_77868 Selaginella moellendorffii SELMODRAFT_77868 I
Solyc01g110480.2 Solanum lycopersicum Solyc01g110480.2 I
TCM_006766 Theobroma cacao TCM_006766 I
Traes_2AL_FA1957F59 Triticum aestivum Traes_2AL_FA1957F59 I
Traes_7BS_7B68879A9 Triticum aestivum Traes_7BS_7B68879A9 I
Traes_7DS_3463CAE33 Triticum aestivum Traes_7DS_3463CAE33 I
TRIUR3_31242 Triticum urartu TRIUR3_31242 I
VIT_03s0038g00860 Vitis vinifera VIT_03s0038g00860 I
Ca_27693 Cicer arietinum Ca_27693 I
Cla016124 Citrullus lanatus Cla016124 I
Cla016125 Citrullus lanatus Cla016125 I
cassava30160.valid.m1 Manihot esculenta cassava30160.valid.m1 I
cassava38273.valid.m1 Manihot esculenta cassava38273.valid.m1 I
Cucsa.382180 Cucumis sativus Cucsa.382180 I
Cucsa.382190 Cucumis sativus Cucsa.382190 I
e_gw1.20.99.1 Physcomitrella patens e_gw1.20.99.1 I
estExt_gwp_gw1.C_200078 Physcomitrella patens estExt_gwp_gw1.C_200078 I
estExt_gwp_gw1.C_5120003 Physcomitrella patens estExt_gwp_gw1.C_5120003 I
gw1.20.225.1 Physcomitrella patens gw1.20.225.1 I
mgf000302m Mimulus guttatus mgf000302m I
mgf004912m Mimulus guttatus mgf004912m I
Aquca_006_00159 Aquilegia coerulea Aquca_006_00159 I
Bostr.25542s0069 Boechera stricta Bostr.25542s0069 I
Ciclev10028062m.g Citrus clementina Ciclev10028062m.g I
Eucgr.D00737 Eucalyptus grandis Eucgr.D00737 I
Eucgr.I01335 Eucalyptus grandis Eucgr.I01335 I
evm.TU.supercontig_150.7 Carica papaya evm.TU.supercontig_150.7 I
evm.TU.supercontig_81.160 Carica papaya evm.TU.supercontig_81.160 I
gene01680-v1.0-hybrid Fragaria vesca gene01680-v1.0-hybrid I
Gorai.001G243800 Gossypium raimondii Gorai.001G243800 I
Gorai.005G248900 Gossypium raimondii Gorai.005G248900 I
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I
Lus10018061.g Linum usitatissimum Lus10018061.g I
Lus10042057.g Linum usitatissimum Lus10042057.g I
orange1.1g007579m.g Citrus sinensis orange1.1g007579m.g I
SapurV1A.0091s0130 Salix purpurea SapurV1A.0091s0130 I
SapurV1A.0379s0290 Salix purpurea SapurV1A.0379s0290 I
Thhalv10024895m.g Eutrema salsugineum Thhalv10024895m.g I
PK00843.1 Cannabis sativa PK00843.1 I
PDK_20s1312701g003 Phoenix dactylifera PDK_20s1312701g003 I
BGIOSGA011761 Oryza indica BGIOSGA011761 N
BGIOSGA031505 Oryza indica BGIOSGA031505 N
BRADI1G76690 Brachypodium distachyon BRADI1G76690 N
BRADI3G31890 Brachypodium distachyon BRADI3G31890 N
F775_33214 Aegilops tauschii F775_33214 N
GRMZM2G353553 Zea mays GRMZM2G353553 N
GRMZM2G428184 Zea mays GRMZM2G428184 N
GRMZM2G473274 Zea mays GRMZM2G473274 N
GSMUA_Achr1G08090_001 Musa acuminata GSMUA_Achr1G08090_001 N
GSMUA_Achr5G20200_001 Musa acuminata GSMUA_Achr5G20200_001 N
LPERR03G02000 Leersia perrieri LPERR03G02000 N
LPERR04G13880 Leersia perrieri LPERR04G13880 N
LPERR10G12670 Leersia perrieri LPERR10G12670 N
MLOC_10725 Hordeum vulgare MLOC_10725 N
MLOC_66865 Hordeum vulgare MLOC_66865 N
MTR_1g023690 Medicago truncatula MTR_1g023690 N
OB03G12130 Oryza brachyantha OB03G12130 N
OB10G23730 Oryza brachyantha OB10G23730 N
OBART03G02190 Oryza barthii OBART03G02190 N
OGLUM03G02140 Oryza glumaepatula OGLUM03G02140 N
OLONG_011520 Oryza longistaminata OLONG_011520 N
OLONG_016151 Oryza longistaminata OLONG_016151 N
OMERI03G02030 Oryza meridionalis OMERI03G02030 N
ONIVA03G01800 Oryza nivara ONIVA03G01800 N
OPUNC03G01930 Oryza punctata OPUNC03G01930 N
OPUNC10G15060 Oryza punctata OPUNC10G15060 N
ORGLA03G0019600 Oryza glaberrima ORGLA03G0019600 N
ORUFI03G01930 Oryza rufipogon ORUFI03G01930 N
OS03G0127500 Oryza sativa OS03G0127500 N
OS10G0531900 Oryza sativa OS10G0531900 N
Sb01g030770 Sorghum bicolor Sb01g030770 N
Sb01g048710 Sorghum bicolor Sb01g048710 N
Si039566m.g Setaria italica Si039566m.g N
TCM_034172 Theobroma cacao TCM_034172 N
Traes_1AL_2AC682D6D Triticum aestivum Traes_1AL_2AC682D6D N
TRIUR3_15472 Triticum urartu TRIUR3_15472 N
TRIUR3_20880 Triticum urartu TRIUR3_20880 N
Ca_10755 Cicer arietinum Ca_10755 N
30131.m007145 Ricinus communis 30131.m007145 N
Cagra.1383s0070 Capsella grandiflora Cagra.1383s0070 N
Carubv10004500m.g Capsella rubella Carubv10004500m.g N
orange1.1g014471m.g Citrus sinensis orange1.1g014471m.g N
Pavir.Ia02926 Panicum virgatum Pavir.Ia02926 N
Pavir.Ib00162 Panicum virgatum Pavir.Ib00162 N
Pavir.J19159 Panicum virgatum Pavir.J19159 N
Pavir.J22781 Panicum virgatum Pavir.J22781 N
Pavir.J29906 Panicum virgatum Pavir.J29906 N