VDBG_02744 (Verticillium alfalfae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 VDBG_02744 T387477_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
clr-2
M01429_2.00 		Neurospora crassa
NNNNNCGGAR
YTCCGNNNNN		 PBM
Lambert et al.(2019)
pTH11853 		0.552 0.816
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EEY16635 Zinc cluster 34 73

Links

Other Zinc cluster family TFs
Other Verticillium alfalfae TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
clr-2 Neurospora crassa NCU08042 D 0.552
MGG_01833 Magnaporthe oryzae MGG_01833 I 0.552
e_gw1.3.2553.1 Cryphonectria parasitica e_gw1.3.2553.1 I 0.552
fgenesh3_pm.C_scaffold_3000122 Neurospora discreta fgenesh3_pm.C_scaffold_3000122 I 0.552
VDAG_03660 Verticillium dahliae VDAG_03660 I 0.683
VDAG_00390 Verticillium dahliae VDAG_00390 I 0.552
THITE_2128774 Thielavia terrestris THITE_2128774 I 0.552
SMAC_03793 Sordaria macrospora SMAC_03793 I 0.552
S40288_04438 Stachybotrys chartarum S40288_04438 I 0.552
S40285_05006 Stachybotrys chlorohalonata S40285_05006 I 0.552
PODANS_6_1990 Podospora anserina PODANS_6_1990 I 0.552
PFICI_05693 Pestalotiopsis fici PFICI_05693 I 0.552
NEUTE1DRAFT_99711 Neurospora tetrasperma NEUTE1DRAFT_99711 I 0.552
VDBG_02744 Verticillium albo atrum VDBG_02744 I 0.683
MAPG_04988 Magnaporthe poae MAPG_04988 I 0.552
HMPREF1624_07333 Sporothrix schenckii HMPREF1624_07333 I 0.552
GLRG_08292 Colletotrichum graminicola GLRG_08292 I 0.552
GGTG_08810 Gaeumannomyces graminis GGTG_08810 I 0.552
F503_04469 Ophiostoma piceae uamh F503_04469 I 0.552
CTHT_0033840 Chaetomium thermophilum CTHT_0033840 I 0.552
CSUB01_07131 Colletotrichum sublineola CSUB01_07131 I 0.552
CH063_04960 Colletotrichum higginsianum CH063_04960 I 0.552
CGGC5_12972 Colletotrichum gloeosporioides CGGC5_12972 I 0.552
CFIO01_00502 Colletotrichum fioriniae CFIO01_00502 I 0.552
ACRE_069340 Acremonium chrysogenum ACRE_069340 I 0.582