VDBG_06838 (Verticillium alfalfae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 VDBG_06838 T387541_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANIA_00568
M01347_2.00 		Aspergillus nidulans
NRDWBSCCGV
BCGGSVWHYN		 PBM
Lambert et al.(2019)
pEX0204 		0.546 0.658
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EEY20728 Zinc cluster 62 99

Links

Other Zinc cluster family TFs
Other Verticillium alfalfae TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I
MLOC_12609 Hordeum vulgare MLOC_12609 I
29830.m001444 Ricinus communis 29830.m001444 N
chr2.CM0272.20.nd Lotus japonicus chr2.CM0272.20.nd N
cassava26650.m1 Manihot esculenta cassava26650.m1 N
Cucsa.044270 Cucumis sativus Cucsa.044270 N
Aquca_015_00350 Aquilegia coerulea Aquca_015_00350 N
Bostr.7867s1419 Boechera stricta Bostr.7867s1419 N
Carubv10005148m.g Capsella rubella Carubv10005148m.g N
Ciclev10027531m.g Citrus clementina Ciclev10027531m.g N
gene13055-v1.0-hybrid Fragaria vesca gene13055-v1.0-hybrid N
Gorai.003G002500 Gossypium raimondii Gorai.003G002500 N
MDP0000125133 Malus domestica MDP0000125133 N
MDP0000192895 Malus domestica MDP0000192895 N
MDP0000215412 Malus domestica MDP0000215412 N
MDP0000291622 Malus domestica MDP0000291622 N
orange1.1g039420m.g Citrus sinensis orange1.1g039420m.g N
SapurV1A.0085s0060 Salix purpurea SapurV1A.0085s0060 N
Thhalv10027037m.g Eutrema salsugineum Thhalv10027037m.g N
AMTR_s00044p00165760 Amborella trichopoda AMTR_s00044p00165760 N
POPTR_0005s10400 Populus trichocarpa POPTR_0005s10400 N
RKD5 Arabidopsis thaliana AT4G35590 N
Bo1g006340 Brassica oleracea Bo1g006340 N
Bra011626 Brassica rapa Bra011626 N
fgenesh2_kg.7__520__AT4G35590.1 Arabidopsis lyrata fgenesh2_kg.7__520__AT4G35590.1 N
GLYMA01G36360 Glycine max GLYMA01G36360 N
GLYMA11G09080 Glycine max GLYMA11G09080 N
GSMUA_Achr8G13370_001 Musa acuminata GSMUA_Achr8G13370_001 N
MTR_5g024070 Medicago truncatula MTR_5g024070 N
Pm026816 Prunus mume Pm026816 N
PRUPE_ppa011563mg Prunus persica PRUPE_ppa011563mg N
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N
SELMODRAFT_73113 Selaginella moellendorffii SELMODRAFT_73113 N
TCM_000070 Theobroma cacao TCM_000070 N
VIT_04s0044g00060 Vitis vinifera VIT_04s0044g00060 N
Cla014580 Citrullus lanatus Cla014580 N