estExt_Genewise1Plus.C_chr_90305 (Mycosphaerella graminicola)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 estExt_Genewise1Plus.C_chr_90305 T389953_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nirA
M01350_2.00 		Aspergillus nidulans
SYNCGGANNH
DNNTCCGNRS		 PBM
Lambert et al.(2019)
pEX0399 		0.629 0.872
nit-4
M01430_2.00 		Neurospora crassa
NTCCGCGGVN
NBCCGCGGAN		 PBM
Lambert et al.(2019)
pTH8909 		0.604 0.846
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_chr_90305 Zinc cluster 55 94

Links

Other Zinc cluster family TFs
Other Mycosphaerella graminicola TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA08G18490 Oryza nivara ONIVA08G18490 N 0.000
Pavir.J12660 Panicum virgatum Pavir.J12660 N 0.000
MDP0000470728 Malus domestica MDP0000470728 N 0.000
Traes_2BS_1E88E202F Triticum aestivum Traes_2BS_1E88E202F N 0.000
Traes_2AS_6F531FBB5 Triticum aestivum Traes_2AS_6F531FBB5 N 0.000
Si038535m.g Setaria italica Si038535m.g N 0.000
Si012339m.g Setaria italica Si012339m.g N 0.000
Sb06g001680 Sorghum bicolor Sb06g001680 N 0.000
ORUFI04G03050 Oryza rufipogon ORUFI04G03050 N 0.000
OPUNC04G02270 Oryza punctata OPUNC04G02270 N 0.000
BGIOSGA015617 Oryza indica BGIOSGA015617 N 0.000
OMERI04G02470 Oryza meridionalis OMERI04G02470 N 0.000
OGLUM04G01970 Oryza glumaepatula OGLUM04G01970 N 0.000
OB04G11920 Oryza brachyantha OB04G11920 N 0.000
MLOC_12524 Hordeum vulgare MLOC_12524 N 0.000
LPERR04G01540 Leersia perrieri LPERR04G01540 N 0.000
GRMZM2G424651 Zea mays GRMZM2G424651 N 0.000
F775_04400 Aegilops tauschii F775_04400 N 0.000
BRADI5G00630 Brachypodium distachyon BRADI5G00630 N 0.000