1958_YBR239C (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 1958_YBR239C T390802_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERT1
M00077_2.00 		Saccharomyces cerevisiae
NYCGGAAY
RTTCCGRN		 PBM
Badis et al.(2008)
YBR239C_2158 		0.683 1.000
ERT1
M01572_2.00 		Saccharomyces cerevisiae
NNCGGARNN
NNYTCCGNN		 PBM
Zhu et al.(2009)
Ybr239c 		0.683 1.000
ERT1
M07504_2.00 		Saccharomyces cerevisiae
DYCGGAAY
RTTCCGRH		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0420.1 		0.683 1.000
ERT1
M08646_2.00 		Saccharomyces cerevisiae
DYCGGAAY
RTTCCGRH		 Misc
DeBoer et al.(2011)
YBR239C_564 		0.683 1.000
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
1958_YBR239C Zinc cluster 38 78

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WUBG_13401 Wuchereria bancrofti WUBG_13401 N
WBGene00241638 Onchocerca volvulus WBGene00241638 N
ACOC_0000581901 Angiostrongylus costaricensis ACOC_0000581901 N
ANCDUO_08441 Ancylostoma duodenale ANCDUO_08441 N
BTMF_0000211801 Brugia timori BTMF_0000211801 N
DME_0000275701 Dracunculus medinensis DME_0000275701 N
EEL_0001053001 Elaeophora elaphi EEL_0001053001 N
GPUH_0001163001 Gongylonema pulchrum GPUH_0001163001 N
NBR_0001150801 Nippostrongylus brasiliensis NBR_0001150801 N
nLs.2.1.2.g09068 Litomosoides sigmodontis nLs.2.1.2.g09068 N
nOo.2.0.1.g07408 Onchocerca ochengi nOo.2.0.1.g07408 N
SVUK_0000292101 Strongylus vulgaris SVUK_0000292101 N
TCLT_0000560301 Thelazia callipaeda TCLT_0000560301 N
TCNE_0000372001 Toxocara canis TCNE_0000372001 N