CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

AMTR_s00049p00214620 *(Amborella trichopoda)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	AMTR_s00049p00214620	T000367_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.796	0.816
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.767	0.755
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.763	0.776
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.763	0.776
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.752	0.796
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.752	0.796
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.752	0.796
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.748	0.796
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.741	0.776
ERF087 M06573_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYYD	HRRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) AT1G28160_col_a	0.741	0.776
ERF087 M06574_2.00	Arabidopsis thaliana	HDYCKCCGCCGYCR	YGRCGGCGGMGRHD	Dap-seq OMalley et al.(2016) AT1G28160_colamp_a	0.741	0.776
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.740	0.776
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.740	0.776
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.739	0.755
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.739	0.755
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.720	0.755
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.720	0.755
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.712	0.776
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.712	0.755
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.712	0.755
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.712	0.755
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.710	0.673
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.710	0.673
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.699	0.735
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.697	0.714
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.697	0.714
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.697	0.714
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.694	0.694
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.694	0.694
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.694	0.694
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.694	0.694
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.694	0.694
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.692	0.694
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.690	0.633
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.688	0.633
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.687	0.714
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.687	0.612
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.682	0.714
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.682	0.714
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.682	0.714
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.682	0.673
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.680	0.694
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.680	0.694
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.680	0.694
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.679	0.673
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.679	0.673
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.679	0.673
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.679	0.673
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.677	0.612
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ERN13817	AP2	31	81	ARYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDYAARAMRG

Links
Other AP2 family TFs
Other *Amborella trichopoda* TFs

1386 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Alligator_sinensis_CCG017539.1	Alligator sinensis	Alligator_sinensis_CCG017539.1	N
Cmyd_10007212	Chelonia mydas	Cmyd_10007212	N
ENSAMEG00000019088	Ailuropoda melanoleuca	ENSAMEG00000019088	N
ENSAPLG00000001368	Anas platyrhynchos	ENSAPLG00000001368	N
ENSCSAG00000018613	Chlorocebus sabaeus	ENSCSAG00000018613	N
ENSFALG00000014375	Ficedula albicollis	ENSFALG00000014375	N
ENSGALG00000016390	Gallus gallus	ENSGALG00000016390	N
ENSLACG00000007239	Latimeria chalumnae	ENSLACG00000007239	N
ENSOARG00000020165	Ovis aries	ENSOARG00000020165	N
ENSP00000314709	Macaca fascicularis	ENSP00000314709	N
ENSP00000314709-D1	Bos grunniens	ENSP00000314709-D1	N
ENSPANG00000002729	Papio anubis	ENSPANG00000002729	N
ENSPSIG00000007720	Pelodiscus sinensis	ENSPSIG00000007720	N
ENSSHAG00000011260	Sarcophilus harrisii	ENSSHAG00000011260	N
ENSSTOG00000011248	Ictidomys tridecemlineatus	ENSSTOG00000011248	N
Myotis_brandtii_ZHX2_10013265	Myotis brandtii	Myotis_brandtii_ZHX2_10013265	N
Ogr14963	Ophisaurus gracilis	Ogr14963	N
Pvit_18224	Pogona vitticeps	Pvit_18224	N
Zhx2	Rattus norvegicus	ENSRNOG00000005417	N
ZHX2	Anolis carolinensis	ENSACAG00000009402	N
ZHX2	Bos taurus	ENSBTAG00000026309	N
ZHX2	Canis familiaris	ENSCAFG00000000967	N
ZHX2	Callithrix jacchus	ENSCJAG00000022247	N
ZHX2	Cavia porcellus	ENSCPOG00000011867	N
ZHX2	Dasypus novemcinctus	ENSDNOG00000018935	N
Zhx2	Dipodomys ordii	ENSDORG00000014490	N
ZHX2	Tursiops truncatus	ENSTTRG00000016360	N
ZHX2	Taeniopygia guttata	ENSTGUG00000012413	N
ZHX2	Equus caballus	ENSECAG00000023125	N
ZHX2	Sus scrofa	ENSSSCG00000021586	N
ZHX2	Erinaceus europaeus	ENSEEUG00000003152	N
ZHX2	Sorex araneus	ENSSARG00000013090	N
ZHX2	Loxodonta africana	ENSLAFG00000009019	N
ZHX2	Pteropus vampyrus	ENSPVAG00000003962	N
ZHX2	Pan troglodytes	ENSPTRG00000020545	N
ZHX2	Felis catus	ENSFCAG00000026338	N
ZHX2	Homo sapiens	ENSG00000178764	N
ZHX2	Ochotona princeps	ENSOPRG00000005053	N
ZHX2	Otolemur garnettii	ENSOGAG00000026824	N
ZHX2	Oryctolagus cuniculus	ENSOCUG00000008550	N
ZHX2	Gorilla gorilla	ENSGGOG00000006502	N
Zhx2	Mus musculus	ENSMUSG00000071757	N
ZHX2	Macaca mulatta	ENSMMUG00000005363	N
ZHX2	Myotis lucifugus	ENSMLUG00000009074	N
ZHX2	Meleagris gallopavo	ENSMGAG00000015867	N

AMTR_s00049p00214620 (Amborella trichopoda) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1386 Related TFs

AMTR_s00049p00214620 **(Amborella trichopoda)
AP2**