CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo1g019600 *(Brassica oleracea)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Bo1g019600	T000721_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.782	0.958
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.739	0.750
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.739	0.750
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.721	0.688
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.719	0.708
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.716	0.792
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.716	0.792
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.716	0.792
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.716	0.792
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.716	0.792
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.716	0.833
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.713	0.771
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.710	0.708
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.710	0.729
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.710	0.729
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.709	0.771
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.706	0.792
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.706	0.792
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.706	0.792
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.704	0.708
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.699	0.750
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.699	0.750
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.696	0.708
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.696	0.708
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.696	0.708
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.692	0.750
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.690	0.771
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.690	0.771
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.688	0.750
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.687	0.625
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.687	0.792
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.687	0.792
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.686	0.729
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.686	0.708
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.686	0.708
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.683	0.646
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.683	0.646
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.681	0.750
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.681	0.792
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.681	0.792
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.681	0.792
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.680	0.667
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.679	0.708
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.679	0.771
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.679	0.771
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.679	0.771
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.677	0.792
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.677	0.792
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo1g019600.1	AP2	125	176	RKYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFHTAEEAAMAYDKAAVRIRG

Links
Other AP2 family TFs
Other *Brassica oleracea* TFs

1496 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R011824	Calypte anna	Aan_R011824	I
Afo_R002575	Aptenodytes forsteri	Afo_R002575	I
Alligator_sinensis_CCG009270.1	Alligator sinensis	Alligator_sinensis_CCG009270.1	I
Brh_R009664	Buceros rhinoceros	Brh_R009664	I
Cmyd_10006544	Chelonia mydas	Cmyd_10006544	I
ENSAMEG00000017735	Ailuropoda melanoleuca	ENSAMEG00000017735	I
ENSAPLG00000013409	Anas platyrhynchos	ENSAPLG00000013409	I
ENSBTAP00000007904-D1	Bos grunniens	ENSBTAP00000007904-D1	I
ENSFALG00000007271	Ficedula albicollis	ENSFALG00000007271	I
ENSMEUG00000011176	Macropus eugenii	ENSMEUG00000011176	I
ENSMGAG00000007084	Meleagris gallopavo	ENSMGAG00000007084	I
ENSMPUG00000016882	Mustela putorius furo	ENSMPUG00000016882	I
ENSOANG00000028755	Ornithorhynchus anatinus	ENSOANG00000028755	I
ENSOARG00000000483	Ovis aries	ENSOARG00000000483	I
ENSP00000189444	Macaca fascicularis	ENSP00000189444	I
ENSSHAG00000018852	Sarcophilus harrisii	ENSSHAG00000018852	I
ENSSTOG00000002191	Ictidomys tridecemlineatus	ENSSTOG00000002191	I
Gfo_R002459	Geospiza fortis	Gfo_R002459	I
Myotis_brandtii_NFKB2_10025917	Myotis brandtii	Myotis_brandtii_NFKB2_10025917	I
NFKB2	Gallus gallus	ENSGALG00000005653	I
NFKB2	Bos taurus	ENSBTAG00000006017	I
NFKB2	Canis familiaris	ENSCAFG00000010155	I
NFKB2	Callithrix jacchus	ENSCJAG00000017928	I
NFKB2	Cavia porcellus	ENSCPOG00000004847	I
NFKB2	Dasypus novemcinctus	ENSDNOG00000032784	I
Nfkb2	Dipodomys ordii	ENSDORG00000013409	I
NFKB2	Taeniopygia guttata	ENSTGUG00000007491	I
NFKB2	Sus scrofa	ENSSSCG00000010580	I
NFKB2	Sorex araneus	ENSSARG00000006180	I
Nfkb2	Rattus norvegicus	ENSRNOG00000019311	I
NFKB2	Procavia capensis	ENSPCAG00000011503	I
NFKB2	Ochotona princeps	ENSOPRG00000006569	I
NFKB2	Otolemur garnettii	ENSOGAG00000016379	I
NFKB2	Oryctolagus cuniculus	ENSOCUG00000005735	I
NFKB2	Anolis carolinensis	ENSACAG00000014215	I
NFKB2	Equus caballus	ENSECAG00000019593	I
Nfkb2	Mus musculus	ENSMUSG00000025225	D
NFKB2	Echinops telfairi	ENSETEG00000002347	I
NFKB2	Myotis lucifugus	ENSMLUG00000006287	I
NFKB2	Microcebus murinus	ENSMICG00000011856	I
NFKB2	Felis catus	ENSFCAG00000001242	I
NFKB2	Loxodonta africana	ENSLAFG00000006805	I
Ogr18048	Ophisaurus gracilis	Ogr18048	I
Pvit_13855	Pogona vitticeps	Pvit_13855	I

Bo1g019600 (Brassica oleracea) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1496 Related TFs

Bo1g019600 **(Brassica oleracea)
AP2**