Bo6g077880 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g077880 T000864_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.684 0.725
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.684 0.725
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.684 0.725
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.677 0.725
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g077880.1 AP2 102 153

Links

Other AP2 family TFs
Other Brassica oleracea TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009163 Calypte anna Aan_R009163 I
Afo_R007440 Aptenodytes forsteri Afo_R007440 I
Alligator_sinensis_CCG009030.1 Alligator sinensis Alligator_sinensis_CCG009030.1 I
ENSACAG00000003497 Anolis carolinensis ENSACAG00000003497 I
ENSAMEG00000007513 Ailuropoda melanoleuca ENSAMEG00000007513 I
ENSBTAP00000010016-D1 Bos grunniens ENSBTAP00000010016-D1 I
ENSCSAG00000004144 Chlorocebus sabaeus ENSCSAG00000004144 I
ENSFALG00000002781 Ficedula albicollis ENSFALG00000002781 I
ENSFCAG00000013579 Felis catus ENSFCAG00000013579 I
ENSLOCG00000001317 Lepisosteus oculatus ENSLOCG00000001317 I
ENSMPUG00000007352 Mustela putorius furo ENSMPUG00000007352 I
ENSNLEG00000005506 Nomascus leucogenys ENSNLEG00000005506 I
ENSOARG00000003567 Ovis aries ENSOARG00000003567 I
ENSP00000254942 Macaca fascicularis ENSP00000254942 I
ENSPANG00000018001 Papio anubis ENSPANG00000018001 I
ENSPPYG00000007505 Pongo abelii ENSPPYG00000007505 I
ENSPSIG00000011530 Pelodiscus sinensis ENSPSIG00000011530 I
ENSSHAG00000013733 Sarcophilus harrisii ENSSHAG00000013733 I
ENSSTOG00000012882 Ictidomys tridecemlineatus ENSSTOG00000012882 I
ENSTGUG00000008090 Taeniopygia guttata ENSTGUG00000008090 I
ENSTSYG00000008563 Tarsius syrichta ENSTSYG00000008563 I
Myotis_brandtii_TERF2_10022452 Myotis brandtii Myotis_brandtii_TERF2_10022452 I
Pvit_16279 Pogona vitticeps Pvit_16279 I
Tal_R010022 Tyto alba Tal_R010022 I
TERF2 Tupaia belangeri ENSTBEG00000011528 I
TERF2 Sus scrofa ENSSSCG00000002762 I
TERF2 Ochotona princeps ENSOPRG00000006995 I
TERF2 Tursiops truncatus ENSTTRG00000010015 I
terf2 Xenopus tropicalis XB-GENE-990299 I
TERF2 Vicugna pacos ENSVPAG00000003993 I
Terf2 Rattus norvegicus ENSRNOG00000020435 I
TERF2 Pteropus vampyrus ENSPVAG00000015982 I
TERF2 Procavia capensis ENSPCAG00000006534 I
TERF2 Bos taurus ENSBTAG00000007617 I
TERF2 Canis familiaris ENSCAFG00000020267 I
TERF2 Choloepus hoffmanni ENSCHOG00000010819 I
TERF2 Callithrix jacchus ENSCJAG00000015339 I
TERF2 Cavia porcellus ENSCPOG00000003717 I
TERF2 Dasypus novemcinctus ENSDNOG00000014627 I
Terf2 Dipodomys ordii ENSDORG00000011208 I
TERF2 Equus caballus ENSECAG00000024534 I
TERF2 Echinops telfairi ENSETEG00000013553 I
TERF2 Homo sapiens ENSG00000132604 I
TERF2 Gorilla gorilla ENSGGOG00000004372 I
TERF2 Myotis lucifugus ENSMLUG00000006584 I
TERF2 Macaca mulatta ENSMMUG00000016633 I
TERF2 Monodelphis domestica ENSMODG00000002766 I
Terf2 Mus musculus ENSMUSG00000031921 D
TERF2 Ornithorhynchus anatinus ENSOANG00000002365 I
TERF2 Oryctolagus cuniculus ENSOCUG00000017662 I
TERF2 Pan troglodytes ENSPTRG00000008281 I
terf2.L Xenopus laevis XB-GENE-990302 I