CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra031234 *(Brassica rapa)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Bra031234	T001208_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PLT1 M06622_2.00	Arabidopsis thaliana	DDCACGNWWHYCRAGRHNN	NNDYCTYGRDWWNCGTGHH	Dap-seq OMalley et al.(2016) PLT1_col_a	0.883	0.885
PLT1 M06623_2.00	Arabidopsis thaliana	DYDCRNWTYYCRAG	CTYGRRAWNYGHRH	Dap-seq OMalley et al.(2016) PLT1_colamp_a	0.883	0.885
Q6SA75_TOBAC M09733_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ANTL_01	0.844	0.827
Q6SA75_TOBAC M09734_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ANTL_02	0.844	0.827
ANT M02647_2.00	Arabidopsis thaliana	DNRCACRNWTCCCVADGYNHW	WDNRCHTBGGGAWNYGTGYNH	SELEX Mathelier et al.(2014) MA0571.1	0.829	0.808
ANT M09705_2.00	Arabidopsis thaliana	CACRNWTCCCRAKG	CMTYGGGAWNYGTG	Transfac Matys et al.(2006) P$ANT_01	0.829	0.808
AIL7 M06688_2.00	Arabidopsis thaliana	CRNWTHYCRAG	CTYGRDAWNYG	Dap-seq OMalley et al.(2016) AIL7_col_a	0.819	0.827
AIL7 M06689_2.00	Arabidopsis thaliana	DCRNWTHYCRAG	CTYGRDAWNYGH	Dap-seq OMalley et al.(2016) AIL7_colamp_a	0.819	0.827
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra031234.1-P	AP2	174	231	SIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQGGYDKEDKAARSYDLAALKYWGP
Bra031234.1-P	AP2	273	325	SMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAITFRGL

Links
Other AP2 family TFs
Other *Brassica rapa* TFs

525 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA007986	Oryza indica	BGIOSGA007986	N
LPERR02G10690	Leersia perrieri	LPERR02G10690	N
OB02G22590	Oryza brachyantha	OB02G22590	N
OBART02G12640	Oryza barthii	OBART02G12640	N
OBART02G12760	Oryza barthii	OBART02G12760	N
OGLUM02G12910	Oryza glumaepatula	OGLUM02G12910	N
OLONG_015354	Oryza longistaminata	OLONG_015354	N
ONIVA02G13670	Oryza nivara	ONIVA02G13670	N
ORGLA02G0113900	Oryza glaberrima	ORGLA02G0113900	N
ORUFI02G12830	Oryza rufipogon	ORUFI02G12830	N
OS02G0288200	Oryza sativa	OS02G0288200	N