CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MTR_2g078680 *(Medicago truncatula)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	MTR_2g078680	T002815_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.842	0.940
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.842	0.940
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.842	0.940
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.837	0.920
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.837	0.920
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.823	0.860
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.823	0.860
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.820	0.880
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.802	0.880
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.802	0.880
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.802	0.880
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.765	0.820
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.765	0.820
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.765	0.820
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.749	0.820
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.749	0.820
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.747	0.740
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.742	0.780
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.742	0.780
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.742	0.780
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.733	0.740
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.732	0.780
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.732	0.780
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.732	0.780
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.718	0.720
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.718	0.680
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.714	0.700
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.714	0.700
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.708	0.700
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.708	0.720
ERF087 M06573_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYYD	HRRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) AT1G28160_col_a	0.703	0.740
ERF087 M06574_2.00	Arabidopsis thaliana	HDYCKCCGCCGYCR	YGRCGGCGGMGRHD	Dap-seq OMalley et al.(2016) AT1G28160_colamp_a	0.703	0.740
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.702	0.760
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.702	0.760
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.702	0.760
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.701	0.700
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.701	0.700
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.700	0.700
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.700	0.700
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.700	0.700
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.698	0.740
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.698	0.700
PK17878.1 M01099_2.00	Cannabis sativa	CGCCGYCR	YGRCGGCG	PBM Lambert et al.(2019) pTH10133	0.697	0.740
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.697	0.620
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.695	0.680
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.695	0.680
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.691	0.760
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.691	0.700
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.691	0.700
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.690	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.690	0.680
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.690	0.680
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.688	0.640
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.686	0.740
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.686	0.740
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.686	0.740
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.684	0.620
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.684	0.660
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.683	0.700
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.682	0.720
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.680	0.700
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.678	0.700
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.678	0.700
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.678	0.700
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.677	0.640
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
KEH38683	AP2	29	80	IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAAREFRGS

Links
Other AP2 family TFs
Other *Medicago truncatula* TFs

1801 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACRE_084480	Acremonium chrysogenum	ACRE_084480	I
BBA_00861	Beauveria bassiana	BBA_00861	I
Bcin10g03530	Botrytis cinerea	Bcin10g03530	I
CCM_05638	Cordyceps militaris	CCM_05638	I
CFIO01_10341	Colletotrichum fioriniae	CFIO01_10341	I
CGGC5_2292	Colletotrichum gloeosporioides	CGGC5_2292	I
CH063_14565	Colletotrichum higginsianum	CH063_14565	I
CHGG_07320	Chaetomium globosum	CHGG_07320	I
CMQ_6218	Grosmannia clavigera	CMQ_6218	I
Cob_10342	Colletotrichum orbiculare	Cob_10342	I
CPUR_07356	Claviceps purpurea	CPUR_07356	I
CSUB01_07393	Colletotrichum sublineola	CSUB01_07393	I
CTHT_0068120	Chaetomium thermophilum	CTHT_0068120	N
estExt_Genewise1Plus.C_140773	Mycosphaerella fijiensis	estExt_Genewise1Plus.C_140773	I
estExt_Genewise1Plus.C_chr_20926	Mycosphaerella graminicola	estExt_Genewise1Plus.C_chr_20926	I
estExt_Genewise1Plus.C_sca_14_chr10_3_00150	Nectria haematococca	estExt_Genewise1Plus.C_sca_14_chr10_3_00150	I
F503_07473	Ophiostoma piceae uamh	F503_07473	I
FFUJ_12164	Fusarium fujikuroi	FFUJ_12164	I
fgenesh2_pg.C_scaffold_1000308	Neurospora discreta	fgenesh2_pg.C_scaffold_1000308	I
FGRRES_15897	Fusarium graminearum	FGRRES_15897	I
FOXG_04283	Fusarium oxysporum	FOXG_04283	I
FPSE_09978	Fusarium pseudograminearum	FPSE_09978	I
FVEG_07406	Fusarium verticillioides	FVEG_07406	I
GGTG_10494	Gaeumannomyces graminis	GGTG_10494	I
GLRG_01236	Colletotrichum graminicola	GLRG_01236	I
H101_06251	Trichophyton interdigitale	H101_06251	I
H102_00463	Trichophyton rubrum	H102_00463	I
H105_00452	Trichophyton soudanense	H105_00452	I
HMPREF1624_00610	Sporothrix schenckii	HMPREF1624_00610	I
M7I_6116	Glarea lozoyensis	M7I_6116	I
MANI_006126	Metarhizium anisopliae	MANI_006126	I
MAPG_09932	Magnaporthe poae	MAPG_09932	I
MBM_00232	Marssonina brunnea	MBM_00232	I
MBR_08762	Metarhizium brunneum	MBR_08762	I
MCYG_00067	Arthroderma otae	MCYG_00067	I
MCYG_00067	Microsporum canis	MCYG_00067	I
MGG_11764	Magnaporthe oryzae	MGG_11764	I
MGU_09012	Metarhizium guizhouense	MGU_09012	I
MGYG_07139	Microsporum gypseum	MGYG_07139	I
MYCFIDRAFT_210457	Pseudocercospora fijiensis	MYCFIDRAFT_210457	I
Mycgr3G68239	Zymoseptoria tritici	Mycgr3G68239	I
MYCTH_2302011	Myceliophthora thermophila	MYCTH_2302011	I
NechaG72439	Fusarium solani	NechaG72439	I
NEUTE1DRAFT_93932	Neurospora tetrasperma	NEUTE1DRAFT_93932	I
OIDMADRAFT_38504	Oidiodendron maius	OIDMADRAFT_38504	I
PAAG_05307	Paracoccidioides sp lutzii	PAAG_05307	I
PABG_06059	Paracoccidioides brasiliensis	PABG_06059	I
PODANS_2_3630	Podospora anserina	PODANS_2_3630	I
PV07_01284	Cladophialophora immunda	PV07_01284	I
S40285_00002	Stachybotrys chlorohalonata	S40285_00002	I
S40288_05664	Stachybotrys chartarum	S40288_05664	I
SAPIO_CDS0532	Scedosporium apiospermum	SAPIO_CDS0532	I
SBOR_2018	Sclerotinia borealis	SBOR_2018	I
SEPMUDRAFT_123488	Sphaerulina musiva	SEPMUDRAFT_123488	I
SMAC_02549	Sordaria macrospora	SMAC_02549	I
SPBR_06805	Sporothrix brasiliensis	SPBR_06805	I
SS1G_07003	Sclerotinia sclerotiorum	SS1G_07003	I
tah-3	Neurospora crassa	NCU03686	D
TESG_03220	Trichophyton tonsurans	TESG_03220	I
THITE_2108176	Thielavia terrestris	THITE_2108176	I
TRIATDRAFT_133633	Trichoderma atroviride	TRIATDRAFT_133633	I
TRIREDRAFT_22925	Trichoderma reesei	TRIREDRAFT_22925	I
TRIVIDRAFT_90960	Trichoderma virens	TRIVIDRAFT_90960	I
UCREL1_5463	Eutypa lata	UCREL1_5463	N
UV8b_6280	Ustilaginoidea virens	UV8b_6280	I
VDBG_09426	Verticillium alfalfae	VDBG_09426	I
VDBG_09426	Verticillium albo atrum	VDBG_09426	I
VHEMI02535	Torrubiella hemipterigena	VHEMI02535	I
X797_003001	Metarhizium robertsii	X797_003001	I

MTR_2g078680 (Medicago truncatula) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1801 Related TFs

MTR_2g078680 **(Medicago truncatula)
AP2**