CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ORUFI04G22230 *(Oryza rufipogon)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	ORUFI04G22230	T004025_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.833	0.959
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.833	0.959
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.816	0.939
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.816	0.939
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.816	0.939
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.793	0.898
A5JTT1_WHEAT M09700_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_01	0.776	0.939
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.748	0.796
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.738	0.837
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.732	0.837
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.732	0.837
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.732	0.837
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.729	0.776
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.727	0.816
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.727	0.776
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.726	0.776
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.726	0.776
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.726	0.776
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.718	0.796
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.718	0.796
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.718	0.796
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.718	0.776
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.718	0.776
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.718	0.776
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.708	0.673
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.704	0.755
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.704	0.755
ERF13 M01615_2.00	Arabidopsis thaliana	VGCCGSCD	HGSCGGCB	PBM Weirauch et al.(2014) pTH7283	0.703	0.755
ERF13 M06612_2.00	Arabidopsis thaliana	NHDBMGCCGCCDYHD	HDRHGGCGGCKVHDN	Dap-seq OMalley et al.(2016) ERF13_colamp_a	0.703	0.755
ERF13 M06613_2.00	Arabidopsis thaliana	HDBMGCCGCCDYHDN	NHDRHGGCGGCKVHD	Dap-seq OMalley et al.(2016) ERF13_col_b	0.703	0.755
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.701	0.694
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.700	0.816
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.696	0.755
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.696	0.755
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.696	0.735
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.696	0.735
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.696	0.735
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.695	0.755
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.690	0.714
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.688	0.735
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.687	0.673
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.687	0.673
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.685	0.694
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.684	0.816
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.684	0.816
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.684	0.816
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.684	0.816
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.684	0.816
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.683	0.735
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.678	0.776
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ORUFI04G22230.1	AP2	150	202	KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDTAEDAALAYDRAAYRMRGS

Links
Other AP2 family TFs
Other *Oryza rufipogon* TFs

1486 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O1_02181	Capronia coronata	A1O1_02181	I
A1O5_08472	Cladophialophora psammophila	A1O5_08472	I
A1O7_08064	Cladophialophora yegresii	A1O7_08064	I
A1O9_08153	Exophiala aquamarina	A1O9_08153	I
AB05299.1	Alternaria brassicicola	AB05299.1	I
ANIA_00928	Aspergillus nidulans	CADANIAG00001727	D
AOL_s00097g406	Arthrobotrys oligospora	AOL_s00097g406	I
ATEG_05199	Aspergillus terreus	CADATEAG00005112	I
AUEXF2481DRAFT_6834	Aureobasidium subglaciale	AUEXF2481DRAFT_6834	I
BAUCODRAFT_78015	Baudoinia compniacensis	BAUCODRAFT_78015	I
CADAFLAG00001126	Aspergillus flavus	CADAFLAG00001126	I
CIMG_03081	Coccidioides immitis	CIMG_03081	I
Cob_04781	Colletotrichum orbiculare	Cob_04781	I
COCC4DRAFT_176529	Bipolaris maydis	COCC4DRAFT_176529	I
COCCADRAFT_31801	Bipolaris zeicola	COCCADRAFT_31801	I
COCMIDRAFT_84450	Bipolaris oryzae	COCMIDRAFT_84450	I
COCSADRAFT_266185	Bipolaris sorokiniana	COCSADRAFT_266185	I
COCVIDRAFT_14051	Bipolaris victoriae	COCVIDRAFT_14051	I
CPC735_010610	Coccidioides posadasii	CPC735_010610	I
DOTSEDRAFT_69884	Dothistroma septosporum	DOTSEDRAFT_69884	I
estExt_Genewise1Plus.C_140773	Mycosphaerella fijiensis	estExt_Genewise1Plus.C_140773	I
estExt_Genewise1Plus.C_80383	Cochliobolus heterostrophus C5	estExt_Genewise1Plus.C_80383	I
estExt_Genewise1Plus.C_chr_20926	Mycosphaerella graminicola	estExt_Genewise1Plus.C_chr_20926	I
EURHEDRAFT_408126	Aspergillus ruber	EURHEDRAFT_408126	I
EV44_g3230	Erysiphe necator	EV44_g3230	I
fgenesh1_pm.00042_#_359	Aspergillus carbonarius	fgenesh1_pm.00042_#_359	I
G647_07030	Cladophialophora carrionii	G647_07030	I
GSTUM_00002996001	Tuber melanosporum	GSTUM_00002996001	I
H072_4801	Dactylellina haptotyla	H072_4801	I
H101_06251	Trichophyton interdigitale	H101_06251	I
H102_00463	Trichophyton rubrum	H102_00463	I
H105_00452	Trichophyton soudanense	H105_00452	I
HCBG_01324	Histoplasma capsulatum	HCBG_01324	I
HMPREF1120_02532	Exophiala dermatitidis	HMPREF1120_02532	I
LEMA_P088770.1	Leptosphaeria maculans	LEMA_P088770.1	I
M437DRAFT_69925	Aureobasidium melanogenum	M437DRAFT_69925	I
M438DRAFT_354976	Aureobasidium pullulans	M438DRAFT_354976	I
MCYG_00067	Microsporum canis	MCYG_00067	I
MCYG_00067	Arthroderma otae	MCYG_00067	I
MGYG_07139	Microsporum gypseum	MGYG_07139	I
MPH_10551	Macrophomina phaseolina	MPH_10551	I
MYCFIDRAFT_210457	Pseudocercospora fijiensis	MYCFIDRAFT_210457	I
Mycgr3G68239	Zymoseptoria tritici	Mycgr3G68239	I
PAAG_05307	Paracoccidioides sp lutzii	PAAG_05307	I
PABG_06059	Paracoccidioides brasiliensis	PABG_06059	I
Pc16g14610	Penicillium chrysogenum	Pc16g14610	I
PCH_Pc16g14610	Penicillium rubens	PCH_Pc16g14610	I
PDE_00510	Penicillium oxalicum	PDE_00510	I
PDIP_65580	Penicillium digitatum	PDIP_65580	I
PEX1_005990	Penicillium expansum	PEX1_005990	I
PITC_097670	Penicillium italicum	PITC_097670	I
PTRG_10554	Pyrenophora triticirepentis	PTRG_10554	I
PTT_02242	Pyrenophora teres	PTT_02242	I
PV04_08584	Capronia semiimmersa	PV04_08584	I
PV07_01284	Cladophialophora immunda	PV07_01284	I
PV09_08665	Verruconis gallopava	PV09_08665	I
SEPMUDRAFT_123488	Sphaerulina musiva	SEPMUDRAFT_123488	I
SETTUDRAFT_32470	Setosphaeria turcica	SETTUDRAFT_32470	I
SNOG_02470	Phaeosphaeria nodorum	SNOG_02470	I
SNOG_02470	Stagonospora nodorum	SNOG_02470	I
TESG_03220	Trichophyton tonsurans	TESG_03220	I
U727_00430440431	Penicillium solitum	U727_00430440431	I
UCRNP2_1469	Neofusicoccum parvum	UCRNP2_1469	I
UREG_02875	Uncinocarpus reesii	UREG_02875	I
VHEMI02370	Torrubiella hemipterigena	VHEMI02370	I
W97_01407	Coniosporium apollinis	W97_01407	I

ORUFI04G22230 (Oryza rufipogon) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1486 Related TFs

ORUFI04G22230 **(Oryza rufipogon)
AP2**