Bostr.15774s0146 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.15774s0146 T007578_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.747 0.854
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.747 0.854
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.747 0.854
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.747 0.854
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.734 0.812
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.734 0.812
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.689 0.812
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.689 0.812
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.689 0.812
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.685 0.854
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.685 0.854
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.685 0.854
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.679 0.792
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.15774s0146.1.p AP2 76 126

Links

Other AP2 family TFs
Other Boechera stricta TFs

450 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30089.m001012 Ricinus communis 30089.m001012 N
Ca_10228 Cicer arietinum Ca_10228 N
Ciclev10016383m.g Citrus clementina Ciclev10016383m.g N
Cla011265 Citrullus lanatus Cla011265 N
Cucsa.142580 Cucumis sativus Cucsa.142580 N
Eucgr.J00637 Eucalyptus grandis Eucgr.J00637 N
evm.TU.supercontig_34.221 Carica papaya evm.TU.supercontig_34.221 N
GLYMA13G03880 Glycine max GLYMA13G03880 N
GLYMA20G10600 Glycine max GLYMA20G10600 N
Gorai.013G266400 Gossypium raimondii Gorai.013G266400 N
mgf016309m Mimulus guttatus mgf016309m N
MTR_5g088230 Medicago truncatula MTR_5g088230 N
orange1.1g025739m.g Citrus sinensis orange1.1g025739m.g N
PGSC0003DMG400022706 Solanum tuberosum PGSC0003DMG400022706 N
Pm001671 Prunus mume Pm001671 N
POPTR_0001s22790 Populus trichocarpa POPTR_0001s22790 N
POPTR_0009s02360 Populus trichocarpa POPTR_0009s02360 N
PRUPE_ppa022266mg Prunus persica PRUPE_ppa022266mg N
SapurV1A.0977s0060 Salix purpurea SapurV1A.0977s0060 N
SapurV1A.1066s0010 Salix purpurea SapurV1A.1066s0010 N
SapurV1A.1951s0040 Salix purpurea SapurV1A.1951s0040 N
SapurV1A.3860s0010 Salix purpurea SapurV1A.3860s0010 N
Solyc01g008980.2 Solanum lycopersicum Solyc01g008980.2 N
TCM_042034 Theobroma cacao TCM_042034 N
VIT_06s0009g01790 Vitis vinifera VIT_06s0009g01790 N