CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ciclev10007849m.g *(Citrus clementina)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Ciclev10007849m.g	T007979_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PLT1 M06622_2.00	Arabidopsis thaliana	DDCACGNWWHYCRAGRHNN	NNDYCTYGRDWWNCGTGHH	Dap-seq OMalley et al.(2016) PLT1_col_a	0.934	0.971
PLT1 M06623_2.00	Arabidopsis thaliana	DYDCRNWTYYCRAG	CTYGRRAWNYGHRH	Dap-seq OMalley et al.(2016) PLT1_colamp_a	0.934	0.971
Q6SA75_TOBAC M09733_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ANTL_01	0.892	0.914
Q6SA75_TOBAC M09734_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ANTL_02	0.892	0.914
ANT M02647_2.00	Arabidopsis thaliana	DNRCACRNWTCCCVADGYNHW	WDNRCHTBGGGAWNYGTGYNH	SELEX Mathelier et al.(2014) MA0571.1	0.889	0.914
ANT M09705_2.00	Arabidopsis thaliana	CACRNWTCCCRAKG	CMTYGGGAWNYGTG	Transfac Matys et al.(2006) P$ANT_01	0.889	0.914
AIL7 M06688_2.00	Arabidopsis thaliana	CRNWTHYCRAG	CTYGRDAWNYG	Dap-seq OMalley et al.(2016) AIL7_col_a	0.853	0.886
AIL7 M06689_2.00	Arabidopsis thaliana	DCRNWTHYCRAG	CTYGRDAWNYGH	Dap-seq OMalley et al.(2016) AIL7_colamp_a	0.853	0.886
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ciclev10007849m	AP2	199	259	SIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGP
Ciclev10007849m	AP2	301	353	SIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGL

Links
Other AP2 family TFs
Other *Citrus clementina* TFs

626 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BN7_1778	Wickerhamomyces ciferrii	BN7_1778	N	0.000
CaO19.7068	Candida albicans	CaO19.7068	N	0.000
CD36_70140	Candida dubliniensis	CD36_70140	N	0.000
CLUG_04645	Candida lusitaniae	CLUG_04645	N	0.000
CLUG_04645	Clavispora lusitaniae	CLUG_04645	N	0.000
CORT_0H01500	Candida orthopsilosis	CORT_0H01500	N	0.000
CPAG_03938	Candida parapsilosis	CPAG_03938	N	0.000
DEHA2A03630g	Debaryomyces hansenii	DEHA2A03630g	N	0.000
estExt_fgenesh1_pg.C_chr_5.10591	Pichia stipitis	estExt_fgenesh1_pg.C_chr_5.10591	N	0.000
G210_2290	Candida maltosa	G210_2290	N	0.000
GNLVRS01_PISO0I05640g	Millerozyma farinosa	GNLVRS01_PISO0I05640g	N	0.000
GNLVRS01_PISO0J07445g	Millerozyma farinosa	GNLVRS01_PISO0J07445g	N	0.000
JL09_g1323	Pichia kudriavzevii	JL09_g1323	N	0.000
LELG_05523	Lodderomyces elongisporus	LELG_05523	N	0.000
PGUG_00224	Candida guilliermondii	PGUG_00224	N	0.000
PGUG_00224	Meyerozyma guilliermondii	PGUG_00224	N	0.000
PICST_67944	Scheffersomyces stipitis	PICST_67944	N	0.000