gene32020-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene32020-v1.0-hybrid T008450_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.713 0.735
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.693 0.653
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.693 0.653
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.692 0.694
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.690 0.694
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.686 0.755
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.683 0.673
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.683 0.673
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.683 0.673
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.682 0.653
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.682 0.653
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.682 0.653
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.679 0.653
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna32020.1-v1.0-hybrid AP2 412 463

Links

Other AP2 family TFs
Other Fragaria vesca TFs

341 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g011790 Brassica oleracea Bo2g011790 N
Cla023001 Citrullus lanatus Cla023001 N
Cucsa.089670 Cucumis sativus Cucsa.089670 N
Eucgr.J00892 Eucalyptus grandis Eucgr.J00892 N
GLYMA08G03525 Glycine max GLYMA08G03525 N
GLYMA08G44950 Glycine max GLYMA08G44950 N
GLYMA14G10483 Glycine max GLYMA14G10483 I
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I
GRMZM2G305856 Zea mays GRMZM2G305856 I
LjSGA_032074.1 Lotus japonicus LjSGA_032074.1 N
MDP0000244980 Malus domestica MDP0000244980 N
MDP0000470422 Malus domestica MDP0000470422 N
mgf018110m Mimulus guttatus mgf018110m N
mgf024109m Mimulus guttatus mgf024109m N
mgf026463m Mimulus guttatus mgf026463m N
MLOC_67874 Hordeum vulgare MLOC_67874 N
ONIVA07G19920 Oryza nivara ONIVA07G19920 N
orange1.1g038824m.g Citrus sinensis orange1.1g038824m.g N
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I
Pavir.Ga02684 Panicum virgatum Pavir.Ga02684 I
Pavir.J19088 Panicum virgatum Pavir.J19088 N
Pavir.J36591 Panicum virgatum Pavir.J36591 I
PDK_20s1675721g001 Phoenix dactylifera PDK_20s1675721g001 N
Pm005451 Prunus mume Pm005451 N
SapurV1A.0004s0360 Salix purpurea SapurV1A.0004s0360 I
Traes_5AL_D1807A4E0 Triticum aestivum Traes_5AL_D1807A4E0 N