Lus10004368.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10004368.g T008738_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.843 0.980
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.843 0.980
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.826 0.959
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.826 0.959
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.826 0.959
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.803 0.918
A5JTT1_WHEAT
M09700_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_01 		0.763 0.918
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.737 0.837
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.737 0.796
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.735 0.776
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.727 0.796
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.727 0.796
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.727 0.796
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.725 0.776
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.725 0.816
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.723 0.776
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.723 0.776
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.723 0.776
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.719 0.816
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.719 0.816
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.719 0.816
ERF6
M01621_2.00 		Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN		 PBM
Weirauch et al.(2014)
pTH7228 		0.714 0.776
ERF6
M06637_2.00 		Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF6_col 		0.714 0.776
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.713 0.776
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.713 0.776
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.713 0.776
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.711 0.714
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.705 0.776
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.705 0.776
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.705 0.776
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.703 0.755
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.703 0.755
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.695 0.653
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.694 0.714
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.693 0.837
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.693 0.837
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.693 0.837
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.693 0.837
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.693 0.837
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.687 0.796
ERF091
M06638_2.00 		Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN		 Dap-seq
OMalley et al.(2016)
AT4G18450_col_a 		0.685 0.776
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.685 0.796
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.685 0.796
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.683 0.714
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.683 0.714
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.683 0.714
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.682 0.735
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.677 0.694
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10004368 AP2 141 193

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

1301 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29647.m002101 Ricinus communis 29647.m002101 I
29827.m002528 Ricinus communis 29827.m002528 I
AMTR_s00002p00225810 Amborella trichopoda AMTR_s00002p00225810 I
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I
AMTR_s00025p00048410 Amborella trichopoda AMTR_s00025p00048410 I
Aquca_026_00421 Aquilegia coerulea Aquca_026_00421 I
Aquca_054_00130 Aquilegia coerulea Aquca_054_00130 I
BGIOSGA033493 Oryza indica BGIOSGA033493 I
Bostr.25463s0338 Boechera stricta Bostr.25463s0338 I
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I
BRADI1G54070 Brachypodium distachyon BRADI1G54070 I
BRADI3G34200 Brachypodium distachyon BRADI3G34200 I
Cagra.1664s0001 Capsella grandiflora Cagra.1664s0001 I
Carubv10002462m.g Capsella rubella Carubv10002462m.g I
cassava24625.valid.m1 Manihot esculenta cassava24625.valid.m1 I
cassava29522.valid.m1 Manihot esculenta cassava29522.valid.m1 I
cassava45205.m1 Manihot esculenta cassava45205.m1 I
cassava8764.m1 Manihot esculenta cassava8764.m1 I
Ca_07836 Cicer arietinum Ca_07836 I
Ciclev10011214m.g Citrus clementina Ciclev10011214m.g I
Ciclev10019118m.g Citrus clementina Ciclev10019118m.g I
Cla016454 Citrullus lanatus Cla016454 I
Cucsa.313090 Cucumis sativus Cucsa.313090 I
Eucgr.E01043 Eucalyptus grandis Eucgr.E01043 I
Eucgr.H01487 Eucalyptus grandis Eucgr.H01487 I
Eucgr.H02385 Eucalyptus grandis Eucgr.H02385 I
evm.TU.supercontig_52.26 Carica papaya evm.TU.supercontig_52.26 I
evm.TU.supercontig_71.72 Carica papaya evm.TU.supercontig_71.72 I
e_gw1.11.52.1 Physcomitrella patens e_gw1.11.52.1 I
F775_11371 Aegilops tauschii F775_11371 I
gene27827-v1.0-hybrid Fragaria vesca gene27827-v1.0-hybrid I
GLYMA02G16670 Glycine max GLYMA02G16670 I
GLYMA03G30940 Glycine max GLYMA03G30940 I
GLYMA10G03140 Glycine max GLYMA10G03140 I
GLYMA19G33770 Glycine max GLYMA19G33770 I
Gorai.004G129600 Gossypium raimondii Gorai.004G129600 I
Gorai.004G184800 Gossypium raimondii Gorai.004G184800 I
Gorai.004G215900 Gossypium raimondii Gorai.004G215900 I
Gorai.006G216700 Gossypium raimondii Gorai.006G216700 I
Gorai.007G136400 Gossypium raimondii Gorai.007G136400 I
GRMZM2G001930 Zea mays GRMZM2G001930 I
GRMZM2G049229 Zea mays GRMZM2G049229 I
GSMUA_Achr11G17840_001 Musa acuminata GSMUA_Achr11G17840_001 I
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I
GSMUA_Achr2G18140_001 Musa acuminata GSMUA_Achr2G18140_001 I
GSMUA_Achr3G17620_001 Musa acuminata GSMUA_Achr3G17620_001 I
GSMUA_Achr4G16980_001 Musa acuminata GSMUA_Achr4G16980_001 I
GSMUA_Achr6G21490_001 Musa acuminata GSMUA_Achr6G21490_001 I
GSMUA_Achr7G04720_001 Musa acuminata GSMUA_Achr7G04720_001 I
GSMUA_Achr8G14720_001 Musa acuminata GSMUA_Achr8G14720_001 I
GSMUA_AchrUn_randomG02900_001 Musa acuminata GSMUA_AchrUn_randomG02900_001 I
LPERR10G15300 Leersia perrieri LPERR10G15300 I
Lus10000484.g Linum usitatissimum Lus10000484.g I
Lus10004574.g Linum usitatissimum Lus10004574.g I
Lus10004575.g Linum usitatissimum Lus10004575.g I
Lus10011578.g Linum usitatissimum Lus10011578.g I
Lus10012457.g Linum usitatissimum Lus10012457.g I
Lus10018787.g Linum usitatissimum Lus10018787.g I
Lus10019247.g Linum usitatissimum Lus10019247.g I
Lus10020503.g Linum usitatissimum Lus10020503.g I
Lus10024871.g Linum usitatissimum Lus10024871.g I
Lus10030970.g Linum usitatissimum Lus10030970.g I
MDP0000225680 Malus domestica MDP0000225680 I
MDP0000617077 Malus domestica MDP0000617077 I
mgf008560m Mimulus guttatus mgf008560m I
MLOC_64735 Hordeum vulgare MLOC_64735 I
MLOC_6900 Hordeum vulgare MLOC_6900 I
MLOC_71611 Hordeum vulgare MLOC_71611 I
MTR_1g072320 Medicago truncatula MTR_1g072320 I
MTR_8g067280 Medicago truncatula MTR_8g067280 I
MYC2 Oryza sativa OS10G0575000 I
OBART07G07130 Oryza barthii OBART07G07130 I
OGLUM10G19510 Oryza glumaepatula OGLUM10G19510 I
OLONG_011820 Oryza longistaminata OLONG_011820 I
OMERI07G05880 Oryza meridionalis OMERI07G05880 I
ONIVA07G05400 Oryza nivara ONIVA07G05400 I
ONIVA10G22030 Oryza nivara ONIVA10G22030 I
OPUNC10G17860 Oryza punctata OPUNC10G17860 I
orange1.1g005651m.g Citrus sinensis orange1.1g005651m.g I
orange1.1g037798m.g Citrus sinensis orange1.1g037798m.g I
ORGLA10G0146100 Oryza glaberrima ORGLA10G0146100 I
ORUFI10G20700 Oryza rufipogon ORUFI10G20700 I
Pavir.Ia03512 Panicum virgatum Pavir.Ia03512 I
Pavir.J28686 Panicum virgatum Pavir.J28686 I
Pavir.J38781 Panicum virgatum Pavir.J38781 I
PDK_20s1464821g001 Phoenix dactylifera PDK_20s1464821g001 I
PGSC0003DMG400012891 Solanum tuberosum PGSC0003DMG400012891 I
PK09702.1 Cannabis sativa PK09702.1 D
Pm002304 Prunus mume Pm002304 I
Pm020164 Prunus mume Pm020164 I
POPTR_0001s02450 Populus trichocarpa POPTR_0001s02450 I
POPTR_0002s05510 Populus trichocarpa POPTR_0002s05510 I
POPTR_0005s23020 Populus trichocarpa POPTR_0005s23020 I
PRUPE_ppa002884m2g Prunus persica PRUPE_ppa002884m2g I
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I
SapurV1A.0076s0350 Salix purpurea SapurV1A.0076s0350 I
SapurV1A.0289s0260 Salix purpurea SapurV1A.0289s0260 I
SapurV1A.0741s0050 Salix purpurea SapurV1A.0741s0050 I
Sb01g028230 Sorghum bicolor Sb01g028230 I
Sb02g006390 Sorghum bicolor Sb02g006390 I
Si029106m.g Setaria italica Si029106m.g I
Si039973m.g Setaria italica Si039973m.g I
Solyc09g065100.1 Solanum lycopersicum Solyc09g065100.1 I
TCM_004403 Theobroma cacao TCM_004403 I
TCM_015714 Theobroma cacao TCM_015714 I
Thhalv10028584m.g Eutrema salsugineum Thhalv10028584m.g I
Traes_1AS_4DA31F550 Triticum aestivum Traes_1AS_4DA31F550 I
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I
TRIUR3_26880 Triticum urartu TRIUR3_26880 I
TT8 Arabidopsis thaliana AT4G09820 I
TT8 Arabidopsis lyrata fgenesh2_kg.6__2968__AT4G09820.1 I
TT8 Vitis vinifera VIT_07s0104g00090 I
VIT_02s0012g01320 Vitis vinifera VIT_02s0012g01320 I