Lus10041023.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10041023.g T008928_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF003
M06667_2.00 		Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN
NDRHDDHKRCGGYGGHGRH		 Dap-seq
OMalley et al.(2016)
ESE3_col_a 		0.754 0.941
ERF003
M06668_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYHDH
DHDRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
ESE3_colamp_a 		0.754 0.941
SHN2
M06660_2.00 		Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH		 Dap-seq
OMalley et al.(2016)
SHN3_col_a 		0.678 0.824
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041023 AP2 6 57

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000011241 Ailuropoda melanoleuca ENSAMEG00000011241 N
ENSCJAG00000015664 Callithrix jacchus ENSCJAG00000015664 I
ENSCSAG00000017830 Chlorocebus sabaeus ENSCSAG00000017830 N
ENSMMUP00000018505 Macaca fascicularis ENSMMUP00000018505 N
ENSNLEG00000011354 Nomascus leucogenys ENSNLEG00000011354 N
ENSOARG00000017953 Ovis aries ENSOARG00000017953 N
ENSOCUG00000015340 Oryctolagus cuniculus ENSOCUG00000015340 N
ENSPANG00000008154 Papio anubis ENSPANG00000008154 N
ENSPPYG00000017395 Pongo abelii ENSPPYG00000017395 N
ENSSSCG00000009866 Sus scrofa ENSSSCG00000009866 N
ENSSSCG00000021941 Sus scrofa ENSSSCG00000021941 N
ENSSTOG00000021741 Ictidomys tridecemlineatus ENSSTOG00000021741 N
ENSTBEG00000016819 Tupaia belangeri ENSTBEG00000016819 N
ENSTSYG00000006410 Tarsius syrichta ENSTSYG00000006410 N
Myotis_brandtii_Zscan21_10002830 Myotis brandtii Myotis_brandtii_Zscan21_10002830 N
ZSCAN21 Otolemur garnettii ENSOGAG00000016311 N
Zscan21 Rattus norvegicus ENSRNOG00000039234 N
ZSCAN21 Tupaia belangeri ENSTBEG00000012971 N
ZSCAN21 Tursiops truncatus ENSTTRG00000012309 N
ZSCAN21 Vicugna pacos ENSVPAG00000004514 N
ZSCAN21 Pteropus vampyrus ENSPVAG00000005181 N
ZSCAN21 Pan troglodytes ENSPTRG00000019469 N
ZSCAN21 Procavia capensis ENSPCAG00000005227 N
Zscan21 Mus musculus ENSMUSG00000037017 N
ZSCAN21 Macaca mulatta ENSMMUG00000014082 N
ZSCAN21 Microcebus murinus ENSMICG00000003959 N
ZSCAN21 Gorilla gorilla ENSGGOG00000011448 N
ZSCAN21 Homo sapiens ENSG00000166529 N
ZSCAN21 Felis catus ENSFCAG00000029089 N
ZSCAN21 Equus caballus ENSECAG00000024642 N
Zscan21 Dipodomys ordii ENSDORG00000009833 N
ZSCAN21 Cavia porcellus ENSCPOG00000015351 N
ZSCAN21 Canis familiaris ENSCAFG00000028916 N
ZSCAN21 Bos taurus ENSBTAG00000030956 N