Pavir.Aa00475 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Aa00475 T009321_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00475.1.p AP2 178 248
Pavir.Aa00475.1.p AP2 290 342
Pavir.Aa00475.2.p AP2 178 238
Pavir.Aa00475.2.p AP2 280 332

Links

Other AP2 family TFs
Other Panicum virgatum TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G69207 Brachypodium distachyon BRADI1G69207 I 0.692
BRADI3G59300 Brachypodium distachyon BRADI3G59300 N 0.872
F775_28442 Aegilops tauschii F775_28442 N 0.776
GRMZM2G130459 Zea mays GRMZM2G130459 N 0.889
GSMUA_AchrUn_randomG23040_001 Musa acuminata GSMUA_AchrUn_randomG23040_001 I 0.677
LPERR02G26580 Leersia perrieri LPERR02G26580 N 0.825
MLOC_10221 Hordeum vulgare MLOC_10221 I 0.692
MLOC_76689 Hordeum vulgare MLOC_76689 N 0.847
OB02G39430 Oryza brachyantha OB02G39430 N 0.893
OB03G19620 Oryza brachyantha OB03G19620 I 0.677
OBART02G32450 Oryza barthii OBART02G32450 N 0.839
OMERI02G31100 Oryza meridionalis OMERI02G31100 N 0.826
OPUNC02G30010 Oryza punctata OPUNC02G30010 N 0.845
ORGLA02G0280000 Oryza glaberrima ORGLA02G0280000 N 0.890
ORGLA03G0090300 Oryza glaberrima ORGLA03G0090300 I 0.698
ORUFI02G34150 Oryza rufipogon ORUFI02G34150 N 0.839
OS02G0747600 Oryza sativa OS02G0747600 N 0.890
OS03G0232200 Oryza sativa OS03G0232200 I 0.698
Pavir.Ab02943 Panicum virgatum Pavir.Ab02943 N 0.886
Sb04g027940 Sorghum bicolor Sb04g027940 N 0.886
Si017580m.g Setaria italica Si017580m.g N 0.892
Traes_4AS_93BB8FB3E Triticum aestivum Traes_4AS_93BB8FB3E I 0.692
Traes_4BL_D4491E3AB Triticum aestivum Traes_4BL_D4491E3AB I 0.681
Traes_4DL_63ACC4A09 Triticum aestivum Traes_4DL_63ACC4A09 I 0.692
Traes_6AL_CE4E76E1A Triticum aestivum Traes_6AL_CE4E76E1A N 0.806
Traes_6BL_340C2A897 Triticum aestivum Traes_6BL_340C2A897 N 0.841
Traes_6DL_2BAA4B7AA Triticum aestivum Traes_6DL_2BAA4B7AA N 0.839
TRIUR3_24654 Triticum urartu TRIUR3_24654 N 0.776