Thhalv10015583m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10015583m.g T009943_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.839 0.980
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.839 0.980
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.784 0.840
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.784 0.840
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.784 0.840
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.784 0.840
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.780 0.920
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.725 0.820
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.725 0.820
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.725 0.820
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.706 0.780
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.698 0.760
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.697 0.780
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.695 0.720
A5JTT1_WHEAT
M09700_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_01 		0.692 0.720
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.688 0.780
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.688 0.780
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.688 0.740
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.688 0.740
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.688 0.740
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.682 0.760
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.682 0.760
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.682 0.760
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.682 0.740
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.681 0.780
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.681 0.780
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.681 0.780
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.677 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10015583m AP2 90 141

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

638 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA010080 Oryza indica BGIOSGA010080 I
BGIOSGA037855 Oryza indica BGIOSGA037855 I
BRADI1G12770 Brachypodium distachyon BRADI1G12770 I
BRADI4G00920 Brachypodium distachyon BRADI4G00920 I
Ca_05320 Cicer arietinum Ca_05320 I
F775_03506 Aegilops tauschii F775_03506 N
F775_10654 Aegilops tauschii F775_10654 N
F775_11635 Aegilops tauschii F775_11635 I
GLYMA05G23291 Glycine max GLYMA05G23291 I
GLYMA17G16741 Glycine max GLYMA17G16741 I
Gorai.012G161900 Gossypium raimondii Gorai.012G161900 I
GRMZM2G036554 Zea mays GRMZM2G036554 I
GRMZM2G049686 Zea mays GRMZM2G049686 I
GRMZM2G068604 Zea mays GRMZM2G068604 I
GRMZM2G155043 Zea mays GRMZM2G155043 I
GRMZM2G355469 Zea mays GRMZM2G355469 I
LPERR03G24050 Leersia perrieri LPERR03G24050 I
LPERR12G16560 Leersia perrieri LPERR12G16560 I
MLOC_36423 Hordeum vulgare MLOC_36423 N
MLOC_42946 Hordeum vulgare MLOC_42946 I
MLOC_68896 Hordeum vulgare MLOC_68896 N
MTR_4g097940 Medicago truncatula MTR_4g097940 I
MTR_5g014640 Medicago truncatula MTR_5g014640 I
OB03G36530 Oryza brachyantha OB03G36530 I
OBART12G19700 Oryza barthii OBART12G19700 I
OGLUM03G29270 Oryza glumaepatula OGLUM03G29270 I
OGLUM12G21470 Oryza glumaepatula OGLUM12G21470 I
OLONG_002504 Oryza longistaminata OLONG_002504 I
OLONG_017178 Oryza longistaminata OLONG_017178 I
OMERI03G25360 Oryza meridionalis OMERI03G25360 I
OMERI12G15000 Oryza meridionalis OMERI12G15000 I
ONIVA03G07570 Oryza nivara ONIVA03G07570 I
OPUNC03G26600 Oryza punctata OPUNC03G26600 I
OPUNC12G17950 Oryza punctata OPUNC12G17950 I
ORGLA03G0269200 Oryza glaberrima ORGLA03G0269200 I
ORGLA12G0170500 Oryza glaberrima ORGLA12G0170500 I
ORUFI12G22050 Oryza rufipogon ORUFI12G22050 I
OS03G0671800 Oryza sativa OS03G0671800 I
OS12G0632600 Oryza sativa OS12G0632600 I
Pavir.Ia01004 Panicum virgatum Pavir.Ia01004 I
Pavir.Ia01038 Panicum virgatum Pavir.Ia01038 I
Pavir.Ia01059 Panicum virgatum Pavir.Ia01059 I
Pavir.Ib04096 Panicum virgatum Pavir.Ib04096 I
Pavir.Ib04188 Panicum virgatum Pavir.Ib04188 I
Pavir.Ib04190 Panicum virgatum Pavir.Ib04190 I
Pavir.J26871 Panicum virgatum Pavir.J26871 I
Pavir.J30022 Panicum virgatum Pavir.J30022 I
Sb01g012260 Sorghum bicolor Sb01g012260 I
Sb01g012280 Sorghum bicolor Sb01g012280 I
Sb06g017460 Sorghum bicolor Sb06g017460 I
Sb08g022760 Sorghum bicolor Sb08g022760 I
Si011972m.g Setaria italica Si011972m.g I
Si024086m.g Setaria italica Si024086m.g I
Si036185m.g Setaria italica Si036185m.g I
Si038721m.g Setaria italica Si038721m.g I
Si039325m.g Setaria italica Si039325m.g I
Traes_4DS_6A9EB40A4 Triticum aestivum Traes_4DS_6A9EB40A4 I
TRIUR3_05977 Triticum urartu TRIUR3_05977 I
TRIUR3_05978 Triticum urartu TRIUR3_05978 N
TRIUR3_15085 Triticum urartu TRIUR3_15085 N