CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK24580.1
(
Cannabis sativa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
PK24580.1
T010100_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK24580.1
M01101_2.00
Cannabis sativa
VGCCGGCM
KGCCGGCB
PBM
Lambert et al.(2019)
pTH11280
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.711
0.694
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.711
0.694
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.711
0.694
For this family, TFs with SR scores >
0.677
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01101_2.00
AP2
51
102
SPYRGVRQRKWGKWAAEIRDPFKGSRLWLGTYTTPEEASKAYEAKRLEFEAM
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK24580.1
AP2
111
162
SPYRGVRQRKWGKWAAEIRDPFKGSRLWLGTYTTPEEASKAYEAKRLEFEAM
Links
Other
AP2
family TFs
Other
Cannabis sativa
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy