chr1.CM0375.170.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr1.CM0375.170.nd T010149_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK17878.1
M01099_2.00 		Cannabis sativa
CGCCGYCR
YGRCGGCG		 PBM
Lambert et al.(2019)
pTH10133 		0.779 0.830
ERF3
M01607_2.00 		Arabidopsis thaliana
CGCCGSCR
YGSCGGCG		 PBM
Weirauch et al.(2014)
pTH8109 		0.747 0.851
ERF3
M06584_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
ERF3_col_a 		0.747 0.851
ERF3
M06585_2.00 		Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN		 Dap-seq
OMalley et al.(2016)
ERF3_colamp_a 		0.747 0.851
OS05G0497200
M01636_2.00 		Oryza sativa
CGSCGCCR
YGGCGSCG		 PBM
Weirauch et al.(2014)
pTH8640 		0.739 0.766
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.726 0.787
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.726 0.787
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.722 0.745
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.717 0.723
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.717 0.723
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.701 0.745
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.701 0.745
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.701 0.745
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.686 0.681
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0375.170.nd AP2 11 62

Links

Other AP2 family TFs
Other Lotus japonicus TFs

409 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00078g84 Arthrobotrys oligospora AOL_s00078g84 N
AUEXF2481DRAFT_397679 Aureobasidium subglaciale AUEXF2481DRAFT_397679 N
Bcin01g06570 Botrytis cinerea Bcin01g06570 N
COCC4DRAFT_190319 Bipolaris maydis COCC4DRAFT_190319 N
COCCADRAFT_24165 Bipolaris zeicola COCCADRAFT_24165 N
COCMIDRAFT_89586 Bipolaris oryzae COCMIDRAFT_89586 N
COCSADRAFT_339916 Bipolaris sorokiniana COCSADRAFT_339916 N
COCVIDRAFT_94626 Bipolaris victoriae COCVIDRAFT_94626 N
DOTSEDRAFT_44483 Dothistroma septosporum DOTSEDRAFT_44483 N
DRE_05980 Drechslerella stenobrocha DRE_05980 N
estExt_fgenesh1_pg.C_chr_40603 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_40603 N
estExt_Genewise1Plus.C_30684 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_30684 N
e_gw1.14.504.1 Mycosphaerella fijiensis e_gw1.14.504.1 N
e_gw1.7.638.1 Mycosphaerella fijiensis e_gw1.7.638.1 N
GMDG_00068 Pseudogymnoascus destructans GMDG_00068 N
GSTUM_00010077001 Tuber melanosporum GSTUM_00010077001 N
LEMA_P026340.1 Leptosphaeria maculans LEMA_P026340.1 N
M437DRAFT_42113 Aureobasidium melanogenum M437DRAFT_42113 N
M438DRAFT_347529 Aureobasidium pullulans M438DRAFT_347529 N
MPH_00536 Macrophomina phaseolina MPH_00536 N
MYCFIDRAFT_156359 Pseudocercospora fijiensis MYCFIDRAFT_156359 N
Mycgr3G109284 Zymoseptoria tritici Mycgr3G109284 N
OIDMADRAFT_179337 Oidiodendron maius OIDMADRAFT_179337 N
PTRG_07876 Pyrenophora triticirepentis PTRG_07876 N
PTT_10593 Pyrenophora teres PTT_10593 N
PV09_01633 Verruconis gallopava PV09_01633 N
PV11_07979 Exophiala sideris PV11_07979 N
SBOR_0727 Sclerotinia borealis SBOR_0727 N
SEPMUDRAFT_154548 Sphaerulina musiva SEPMUDRAFT_154548 N
SETTUDRAFT_106188 Setosphaeria turcica SETTUDRAFT_106188 N
SNOG_04741 Phaeosphaeria nodorum SNOG_04741 N
SNOG_04741 Stagonospora nodorum SNOG_04741 N
UCRNP2_4518 Neofusicoccum parvum UCRNP2_4518 N
W97_03506 Coniosporium apollinis W97_03506 N